New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1935465	37 (0.730)	3 (0.060)	3/246	NT	8.1%	coding (730/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase
	?	NC_002947	= 1935502	33 (0.690)					coding (767/936 nt)	htrB	lipid A biosynthesis lauroyl acyltransferase

AGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGTTCAAGTCGCGGCCCGAGGGT  >  NC_002947/1935355‑1935638                                                                                                                                                    |                                                                                                                                         aGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCGCCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCg                                                                                                                                         >  4:291425‑M2/1‑148 (MQ=255)    agagCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccg                                                                                                                                      >  4:94650‑M2/1‑145 (MQ=255)            ttCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGa                                                                                                                              <  2:272492/149‑1 (MQ=255)              cGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACg                                                                                                                                <  7:1669/145‑1 (MQ=255)                   cGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTcccc                                                                                                                       >  2:199404/1‑149 (MQ=255)                                    gcggcgACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGc                                                                                                      <  4:147590/149‑1 (MQ=255)                                                aCCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTgc                                                                                           <  5:77969/148‑1 (MQ=255)                                                aCCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTgc                                                                                           <  6:302692/148‑1 (MQ=255)                                                 ccGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTGCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTCGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGAGAAGAGGCCGATTGCCTgcg                                                                                          >  1:299012/1‑148 (MQ=255)                                                 ccGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTgcg                                                                                          >  7:286928/1‑148 (MQ=255)                                                    cTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCAt                                                                                       >  2:56091/1‑148 (MQ=255)                                                    cTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATc                                                                                      <  1:56091/149‑1 (MQ=255)                                                          ccaAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGc                                                                                               >  8:230678/1‑134 (MQ=255)                                                          ccaAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGc                                                                                               <  7:230678/134‑1 (MQ=255)                                                           caAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAag                                                                                                          >  7:15692/1‑122 (MQ=255)                                                           caAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAag                                                                                                          <  8:15692/122‑1 (MQ=255)                                                             aGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATgg                                                                             >  7:14442/1‑149 (MQ=255)                                                              gTTCGCCCGGGTGGGGAAGGCGCAGGTGAATCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATggg                                                                            <  2:254279/149‑1 (MQ=255)                                                                               aGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTgcgc                                                           <  1:199404/149‑1 (MQ=255)                                                                                       gTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGccc                                                   >  2:294958/1‑149 (MQ=255)                                                                                             ccGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGc                                              <  1:294958/148‑1 (MQ=255)                                                                                               gTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATgg                                                                             >  6:164148/1‑115 (MQ=255)                                                                                               gTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATgg                                                                             <  5:164148/115‑1 (MQ=255)                                                                                                ttCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCgt                                                                  <  7:219980/125‑1 (MQ=255)                                                                                                ttCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTACCCGGGGAAAGCCAAGAGGCCGATTGCCTGCGCATCAACAAATTGGTCGAGAGCgt                                                                  >  8:219980/1‑125 (MQ=255)                                                                                                    cccAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCtg                                      >  4:12025/1‑149 (MQ=255)                                                                                                     ccAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccgtcgccgcggggatgccaaacaacggtacgaag                                     <  4:53125‑M2/149‑102 (MQ=255)                                                                                                      cAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccgtcgccgcggggatgccaaacaacggtacg                                        <  7:46257‑M2/145‑99 (MQ=255)                                                                                                       aaaaGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCgccgcttttgggtgaacggaatcacctgcgccttccccaaccgggcgaacttggtggtagcggtcaccgtcgccgcggggatgccaaacaacggtacgaagat                                   <  1:37313‑M2/149‑104 (MQ=255)                                                                                                       aaaaGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTgg                                   <  8:286928/149‑1 (MQ=255)                                                                                                                  gaggaTGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCAccgccg                        >  5:317171/1‑149 (MQ=255)                                                                                                                     gaTGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGtt                     >  1:217512/1‑149 (MQ=255)                                                                                                                      aTGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGtt                     >  7:205811/1‑148 (MQ=255)                                                                                                                          cAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGCGACGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGTTCAAGt                >  8:282506/1‑149 (MQ=255)                                                                                                                                  aTCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGTTCAAGTCGCGGccc        >  7:154006/1‑149 (MQ=255)                                                                                                                                     ggCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGTTCAAGTCGCGGCCCGAg     <  8:154006/149‑1 (MQ=255)                                                                                                                                        tGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGTTCAAGTCGCGGCCCGAGGGt  <  8:205811/149‑1 (MQ=255)                                                                                                                                             aTCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTgcgc                                                           >  7:99237/1‑87 (MQ=255)                                                                                                                                             aTCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTgcgc                                                           <  8:99237/87‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                         AGCAGAGCATCTTCGTACCGTTGTTTGGCATCCCCGCGGCGACGGTGACCGCTACCACCAAGTTCGCCCGGTTGGGGAAGGCGCAGGTGATTCCGTTCACCCAAAAGCGGCTGGAGGATGGCAGCGGCTATCGGCTGGTCATCCACCCGCCGCTGACGGATTTCCCCGGGGAAAGCGAAGAGGCCGATTGCCTGCGCATCAACCAATGGGTCGAGAGCGTGTTGCGCGAGTGCCCCGAGCAGTACCTGTGGGCGCACCGCCGGTTCAAGTCGCGGCCCGAGGGT  >  NC_002947/1935355‑1935638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.