New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2385305 =	41 (0.810)	3 (0.060)	3/248	NT	7.4%	coding (573/576 nt)	PP_2093	two‑component system response regulator NasT
	?	NC_002947	2385341 =	36 (0.740)					coding (537/576 nt)	PP_2093	two‑component system response regulator NasT

ACCCGCTCCATGGGTGTGGAGGGGAGAGCGACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGAT  >  NC_002947/2385163‑2385451                                                                                                                                               |                                                                                                                                                   tcccGCTCCTTGTGTGTGGAGGGGAGAGCGACGTCTTTGTCGGTATTCAATTTGGTTAACCGCCGTTGGCTACCTGTGAGATTTGTTCAGCAAGAGATTGGCCTACTTCCGGGGCGTCTTGCTCGGAATTTTCAGCGCATCAGCCGAGc                                                                                                                                              <  8:299980/148‑1 (MQ=255)      cTCCATGGGTGTGGAGGGGAGAGCGACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCAtctc                                                                                                                                         <  3:241308/149‑1 (MQ=255)         cATGGGTGTGGAGGGGAGAGCGACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTcat                                                                                                                                       <  1:298002/148‑1 (MQ=255)         cATGGGTGTGGAGGGGAGAGCGACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTcat                                                                                                                                       <  4:268254/148‑1 (MQ=255)                 tgGAGGGGAGAGCGACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCaa                                                                                                                              >  8:152866/1‑149 (MQ=255)                   gAGGGGAGAGCGACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATg                                                                                                                            <  7:152866/149‑1 (MQ=255)                             cgcatcgagcaggccaagggcttgctgatgaaaatgaaggactgcaacgaagagcaggcctacaccctgatgcgtcgccaggccatgagccggcagcagaagctgatccaggttGCCGAGCATCTCATGCATGGCAATGATCTGTTCgg                                                                                                                  >  6:289121‑M1/115‑149 (MQ=255)                              gACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCgg                                                                                                                  >  6:194046/1‑148 (MQ=255)                                atcgagcaggccaagggcttgctgatgaaaatgaaggactgcaacgaagagctcgcctacaccctgatgcgacgccaggccatgagccggcagcagaagctgatccaggttGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCaa                                                                                                               >  1:104693‑M1/112‑149 (MQ=255)                                 gTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGAt                                                                                                                          >  4:246370/1‑137 (MQ=255)                                 gTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGAt                                                                                                                          <  3:246370/137‑1 (MQ=255)                                  tCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGtt                                                                                                                     <  4:123806/141‑1 (MQ=255)                                  tCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGtt                                                                                                                     >  3:123806/1‑141 (MQ=255)                                   gagcaggccaagggcttgctgatgaaaatgaaggactgcaacgaagagcaggcctacaccctgatgcgtcgccaggccatgagccggcagcagaagctgatccaggttGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCt                                                                                                            >  8:264399‑M1/109‑149 (MQ=255)                                      tGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTgg                                                                                                          <  5:194046/148‑1 (MQ=255)                                        tCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGAt                                                                                                        >  7:69810/1‑148 (MQ=255)                                         cGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACATGGAt                                                                                                        >  1:123672/1‑147 (MQ=255)                                                   gTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCAGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTctgctg                                                                                            >  6:284629/1‑149 (MQ=255)                                                       ggTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCgg                                                                                        <  7:278299/149‑1 (MQ=255)                                                                    ggCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTgg                                                                            <  8:119615/148‑1 (MQ=255)                                                                          cGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGc                                                                      >  1:58450/1‑148 (MQ=255)                                                                             tGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCa                                                                  <  2:123672/149‑1 (MQ=255)                                                                               agaTTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAg                                                                 <  2:195811/148‑1 (MQ=255)                                                                               agaTTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAg                                                                 >  1:195811/1‑148 (MQ=255)                                                                                     gTTCTGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGTAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGTCTGTCGACGCATCa                                                                  <  3:56221/141‑1 (MQ=255)                                                                                     gTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGCATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCa                                                                  >  4:56221/1‑141 (MQ=255)                                                                                        cAGCAAGAGATGGGCCAACTTCCGGCGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGcc                                                       >  4:72018/1‑149 (MQ=255)                                                                                         aGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCt                                                      >  7:13251/1‑149 (MQ=255)                                                                                          gCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTg                                                     <  8:69810/149‑1 (MQ=255)                                                                                            aaGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGct                                                   >  3:244560/1‑149 (MQ=255)                                                                                             agagATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGGTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGctc                                                  <  7:239333/149‑1 (MQ=255)                                                                                                     gCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTg                                           >  7:95838/1‑148 (MQ=255)                                                                                                     gCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGc                                          <  4:244560/149‑1 (MQ=255)                                                                                                      ccAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCa                                         <  2:58450/149‑1 (MQ=255)                                                                                                       cAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAg                                        >  1:30838/1‑149 (MQ=255)                                                                                                                   cggcTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAAGCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTtc                            <  2:30838/149‑1 (MQ=255)                                                                                                                           tCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGgtgt                                                            >  1:221732/1‑109 (MQ=255)                                                                                                                           tCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGgtgt                                                            <  2:221732/109‑1 (MQ=255)                                                                                                                           tCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGc                      >  5:43265/1‑147 (MQ=255)                                                                                                                            ctgAATTTTCAGCGCATCAGCCGAGAATCTCATGCATGGCAATTATCTGTTCGGCAACCTGGATCATCTTCTGCTGCCGGCTCATGGCCTGTCGACGCATCAGGGTGTAGTCCTGCTCTTCTTTGCAGTCCTTCATTTTCATCAGCaa                    <  8:101333/146‑1 (MQ=255)                                                                                                                             ggAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAg                   <  8:95838/148‑1 (MQ=255)                                                                                                                             ggAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGc                  >  3:37735/1‑149 (MQ=255)                                                                                                                                 ttttCAGCGCATCAGCAGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCtt              <  5:284629/149‑1 (MQ=255)                                                                                                                                       gcgcATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTg        >  2:306652/1‑149 (MQ=255)                                                                                                                                              aGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGAt  <  6:28732/148‑1 (MQ=255)                                                                                                                                              aGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGAt  >  5:28732/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                   ACCCGCTCCATGGGTGTGGAGGGGAGAGCGACGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGAT  >  NC_002947/2385163‑2385451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.