New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2385305 =	41 (0.810)	3 (0.060)	3/248	NT	7.4%	coding (573/576 nt)	PP_2093	two‑component system response regulator NasT
	?	NC_002947	2385341 =	36 (0.740)					coding (537/576 nt)	PP_2093	two‑component system response regulator NasT

CGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATGCGCTTGCGTTCGGCCAATTGCTGGTCGCGCGCCAGCA  >  NC_002947/2385194‑2385489                                                                                                                                                    |                                                                                                                                                     atcgagcaggccaagggcttgctgatgaaaatgaaggactgcaacgaagagctcgcctacaccctgatgcgacgccaggccatgagccggcagcagaagctgatccaggttGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCaa                                                                                                                                                     >  1:104693‑M1/112‑149 (MQ=255)    gagcaggccaagggcttgctgatgaaaatgaaggactgcaacgaagagcaggcctacaccctgatgcgtcgccaggccatgagccggcagcagaagctgatccaggttGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCt                                                                                                                                                  >  8:264399‑M1/109‑149 (MQ=255)       tGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTgg                                                                                                                                                <  5:194046/148‑1 (MQ=255)         tCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGAt                                                                                                                                              >  7:69810/1‑148 (MQ=255)          cGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACATGGAt                                                                                                                                              >  1:123672/1‑147 (MQ=255)                    gTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCAGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTctgctg                                                                                                                                  >  6:284629/1‑149 (MQ=255)                        ggTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCgg                                                                                                                              <  7:278299/149‑1 (MQ=255)                                     ggCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTgg                                                                                                                  <  8:119615/148‑1 (MQ=255)                                           cGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGc                                                                                                            >  1:58450/1‑148 (MQ=255)                                              tGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCa                                                                                                        <  2:123672/149‑1 (MQ=255)                                                agaTTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAg                                                                                                       <  2:195811/148‑1 (MQ=255)                                                agaTTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAg                                                                                                       >  1:195811/1‑148 (MQ=255)                                                      gTTCTGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGTAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGTCTGTCGACGCATCa                                                                                                        <  3:56221/141‑1 (MQ=255)                                                      gTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGCATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCa                                                                                                        >  4:56221/1‑141 (MQ=255)                                                         cAGCAAGAGATGGGCCAACTTCCGGCGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGcc                                                                                             >  4:72018/1‑149 (MQ=255)                                                          aGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCt                                                                                            >  7:13251/1‑149 (MQ=255)                                                           gCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTg                                                                                           <  8:69810/149‑1 (MQ=255)                                                             aaGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGct                                                                                         >  3:244560/1‑149 (MQ=255)                                                              agagATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGGTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGctc                                                                                        <  7:239333/149‑1 (MQ=255)                                                                      gCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTg                                                                                 >  7:95838/1‑148 (MQ=255)                                                                      gCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGc                                                                                <  4:244560/149‑1 (MQ=255)                                                                       ccAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCa                                                                               <  2:58450/149‑1 (MQ=255)                                                                        cAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAg                                                                              >  1:30838/1‑149 (MQ=255)                                                                                    cggcTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAAGCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTtc                                                                  <  2:30838/149‑1 (MQ=255)                                                                                            tCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGgtgt                                                                                                  >  1:221732/1‑109 (MQ=255)                                                                                            tCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGgtgt                                                                                                  <  2:221732/109‑1 (MQ=255)                                                                                            tCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGc                                                            >  5:43265/1‑147 (MQ=255)                                                                                             ctgAATTTTCAGCGCATCAGCCGAGAATCTCATGCATGGCAATTATCTGTTCGGCAACCTGGATCATCTTCTGCTGCCGGCTCATGGCCTGTCGACGCATCAGGGTGTAGTCCTGCTCTTCTTTGCAGTCCTTCATTTTCATCAGCaa                                                          <  8:101333/146‑1 (MQ=255)                                                                                              ggAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAg                                                         <  8:95838/148‑1 (MQ=255)                                                                                              ggAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGc                                                        >  3:37735/1‑149 (MQ=255)                                                                                                  ttttCAGCGCATCAGCAGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCtt                                                    <  5:284629/149‑1 (MQ=255)                                                                                                        gcgcATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTg                                              >  2:306652/1‑149 (MQ=255)                                                                                                           aggttgccgaacagatcattgccatgcatgagatgctcggcAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTc                                           >  8:264399‑M2/42‑149 (MQ=255)                                                                                                              ttgccgaacagatcattgccatgcatgagatgctcggcAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGTCGCATCAGGGTGTAGGCGAGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGAt                                        >  1:104693‑M2/39‑149 (MQ=255)                                                                                                               aGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGAt                                        <  6:28732/148‑1 (MQ=255)                                                                                                               aGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGAt                                        >  5:28732/1‑148 (MQ=255)                                                                                                                 ccgaacagatcattgccatgcatgagatgctcggcAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATgcg                                     >  6:289121‑M2/36‑149 (MQ=255)                                                                                                                 CCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCAt                                                                                                          >  2:87247‑M1/1‑80 (MQ=255)                                                                                                                 CCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCAt                                                                                                          <  1:87247‑M1/80‑1 (MQ=255)                                                                                                                      cATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATAAGCAAGCCCTTGGCCTGCTCGATGCGCTTGc                                >  3:89409/1‑149 (MQ=255)                                                                                                                               catgGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATGCGCtt                                  <  5:52698/138‑1 (MQ=255)                                                                                                                               catgGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATGCGCtt                                  >  6:52698/1‑138 (MQ=255)                                                                                                                                     aaTGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATGCGCTTGCGTTCGGCCAATTGCt                 <  6:43265/149‑1 (MQ=255)                                                                                                                                          tCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATGCGCTTGCGTTCGGCCAATTGCTGGTcg            >  3:304712/1‑149 (MQ=255)                                                                                                                                                    aaCCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATGCGCTTGCGTTCGGCCAATTGCTGGTCGCGCGCcagca  >  4:263231/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                     CGTCTTTGTCGGGATTCAAGTGGGGTAACCGCCGTTGGCTACCGGTGAGATTTGTTCAGCAAGAGATGGGCCAACTTCCGGGGCGGCTTGCTCGGAATTTTCAGCGCATCAGCCGAGCATCTCATGCATGGCAATGATCTGTTCGGCAACCTGGATCAGCTTCTGCTGCCGGCTCATGGCCTGGCGACGCATCAGGGTGTAGGCCTGCTCTTCGTTGCAGTCCTTCATTTTCATCAGCAAGCCCTTGGCCTGCTCGATGCGCTTGCGTTCGGCCAATTGCTGGTCGCGCGCCAGCA  >  NC_002947/2385194‑2385489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.