New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2472102 =	35 (0.690)	3 (0.090)	3/180	NT	11.0%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472226 =	24 (0.680)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAA  >  NC_002947/2471955‑2472229                                                                                                                                                    |                                                                                                                                 ccTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAg                                                                                                                                 >  7:139447/1‑149 (MQ=255)  cTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGc                                                                                                                                <  2:137491/149‑1 (MQ=255)   tGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGcc                                                                                                                               >  4:310839/1‑149 (MQ=255)     aCCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCtg                                                                                                                             >  4:195862/1‑149 (MQ=255)       cGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCtgtg                                                                                                                           <  1:136786/149‑1 (MQ=255)          ggctgtggaatggtgccgggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCg                                                                                                                        <  7:101656‑M1/11‑1 (MQ=255)             gCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGc                                                                                                                      >  8:152566/1‑148 (MQ=255)             gCCCTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGc                                                                                                                      <  8:161287/148‑1 (MQ=255)               cGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCctc                                                                                                                   <  7:164193/149‑1 (MQ=255)                gTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCg                                                                                                                        >  6:5943/1‑143 (MQ=255)                gTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCg                                                                                                                        <  5:5943/143‑1 (MQ=255)                 gaatggtgccgggctgggacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCctct                                                                                                                  >  7:229934‑M1/132‑148 (MQ=255)                     aGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTcgcg                                                                                                             >  3:228986/1‑149 (MQ=255)                       ggccAGAATGAAGATGTGGTGCGCTCCCAGGTGCTGGAGGCGCACAAGATCCGCATGGGCCTGCATGCCTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCggg                                                                                                           >  5:155697/3‑149 (MQ=255)                          cAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCgg                                                                                                            <  4:139517/145‑1 (MQ=255)                          cAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCgg                                                                                                            >  3:139517/1‑145 (MQ=255)                            gAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAAc                                                                                                      <  3:195862/149‑1 (MQ=255)                             aaTGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAAcc                                                                                                     <  4:228986/149‑1 (MQ=255)                                  gacaggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCgg                                                                                                            <  3:207308‑M1/23‑1 (MQ=255)                                  gacaggtgttgtttgatgaacaggggcggccggcgcgggtgtaccagctggatggtggcgggggtgaggctacagagtttaaaaggcgggcgtagtgaggttcggagtgtttacAGCCTGGGCCGGCCTCTTCGCGGGTAAGACCG‑ctg                                                                                               <  6:232137‑M1/35‑2 (MQ=255)                                   gATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑c                                                                                                 <  4:1436/146‑1 (MQ=255)                                   gATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑c                                                                                                 >  3:1436/1‑146 (MQ=255)                                     aggtgttttttgatgaacaggggcggccggcgcgggtgtaccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGGCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTa                                                                                            >  1:47541‑M1/112‑149 (MQ=255)                                         gtgCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTacgac                                                                                        >  5:224658/1‑149 (MQ=255)                                           gcgcTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACgg                                                                                      >  6:165873/1‑149 (MQ=255)                                                  aaGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTgcgc                                                                               <  3:310839/149‑1 (MQ=255)                                                    ggTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGccc                                                                             <  5:149194/149‑1 (MQ=255)                                                        cTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAac                                                                         <  8:139447/149‑1 (MQ=255)                                                           gAGGCGCACAAGATCCTCATGGTCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAacac                                                                       <  8:301626/148‑1 (MQ=255)                                                                  acaAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTacga                                                                                         <  7:114167/123‑1 (MQ=255)                                                                  acaAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTacga                                                                                         >  8:114167/1‑123 (MQ=255)                                                                   caAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCCTCCTACGACGGCCTGCGCCCAAACACCAAtgtgt                                                               <  1:48057/149‑1 (MQ=255)                                                                   caAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAAtgtgtg                                                              <  2:16377/149‑1 (MQ=255)                                                                        tCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAc                                                         <  7:152566/149‑1 (MQ=255)                                                                             ccagctggatgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAccccc                                                     <  2:167615‑M1/77‑1 (MQ=255)                                                                                  ccTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAg                                               <  5:165873/149‑1 (MQ=255)                                                                                      tgctggcgggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGgtgt                                           >  5:126051‑M1/63‑149 (MQ=255)                                                                                           cTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCAACGACGGCCTGAGCCCAAAAACCCATGTGTGTGAACCCCCCATGACGGGTAGGAg                                      >  5:140431/1‑149 (MQ=37)                                                                                             gggggtgaggctacagagtttaaaaaccgggcgtagtgagattcagagtttttacAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCg                                    >  1:167615‑M1/56‑149 (MQ=255)                                                                                              cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTc                                                            <  8:197292/124‑1 (MQ=255)                                                                                              cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTc                                                            >  7:197292/1‑124 (MQ=255)                                                                                                aCCGCGAAGCAGTCCATGATCTTGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGt                                 <  6:224658/149‑1 (MQ=255)                                                                                                  cgcgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGttt                               <  2:295584/149‑1 (MQ=255)                                                                                                    cgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGAAGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAAACAGGTGTAGGAGCGGGTTTAc                             >  3:174487/1‑149 (MQ=255)                                                                                                              cATGATCTGGTCAATGCGGTGTTGGGTATCTGTTCTTTAGCGTGTGCCGGCCTCTTCGCGGTTAAACCGG‑CTCCTCGTACTGCTTGCGCCCAAACACCAATGTGTTTCAACCCCAAATCTGGTGTTGTTGGGGTTTTACCCGCGAaga                    <  4:174487/148‑1 (MQ=255)                                                                                                                                 tggtggggagtTGATTTATAGCCTGTGCGGGCCTCTGCGCGGGTAACCCCG‑CTCCTCCGACGGCCTGCGCCCAAACACCAATGTGTGTCCCCCCCCAATCTGGTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTaa  <  6:140431/141‑1 (MQ=25)                                                                                                                                                    |                                                                                                                                 CCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCG‑CTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAA  >  NC_002947/2471955‑2472229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.