New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2472102 =	35 (0.690)	3 (0.090)	3/180	NT	11.0%	intergenic (+6/+143)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase
	?	NC_002947	2472226 =	24 (0.680)					intergenic (+130/+19)	PP_2166/PP_2167	anti‑anti‑sigma factor/PhoD‑like phosphatase

TGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCC  >  NC_002947/2472083‑2472363                                                                                                                                                |                                                                                                                                          tggtggggagtTGATTTATAGCCTGTGCGGGCCTCTGCGCGGGTAACCCCGCTCCTCCGACGGCCTGCGCCCAAACACCAATGTGTGTCCCCCCCCAATCTGGTGTAGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTaa                                                                                                                                        <  6:140431/141‑1 (MQ=25)                                 ctctTCGCGGGTAAACCCGCACCTAAGACGGCCTGCGCCCCAACACCAAAGTGTGTCCACCCCCCATCATGTGTAGGAGCGGGGTTAACCGCGAAGAGGCCGGCACAGGCAGTAAAAACTCTGAATCTCACTACGCCACGTTTTTAAAc                                                                                                      >  8:101656/1‑149 (MQ=37)                                            TAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCt                                                                                            <  1:125616‑M1/148‑1 (MQ=255)                                                  cgctcctacacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccccc                                                                                     >  1:167615‑M2/95‑149 (MQ=255)                                                  aggTCCTACGACGGCGTGGGCCCAAACACCAATGTGTGTCCACCCCCACTCAGGTGTTGGCGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccccc                                                                                     >  6:155697‑M1/4‑149 (MQ=255)                                                  CGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccccc                                                                                     <  5:144194‑M1/149‑1 (MQ=255)                                                       CTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCg                                                                                    <  3:120240‑M1/145‑1 (MQ=255)                                                       CTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCg                                                                                    >  4:120240‑M1/1‑145 (MQ=255)                                                        TACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAct                                                                                                     <  8:281922‑M1/127‑1 (MQ=255)                                                        TACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAct                                                                                                     >  7:281922‑M1/1‑127 (MQ=255)                                                         acacctgattgggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCa                                                                              >  5:126051‑M2/88‑149 (MQ=255)                                                             cgGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATc                                                                            >  3:103071/1‑147 (MQ=255)                                                                ccTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTaaa                                                                                                       >  3:199588/1‑117 (MQ=255)                                                                ccTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTaaa                                                                                                       <  4:199588/117‑1 (MQ=255)                                                                ccTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCAGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCAGTACGCCCGGGTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCt                                                                       >  5:232137/1‑149 (MQ=255)                                                                 cTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGc                                                                                              <  3:230854/125‑1 (MQ=255)                                                                 cTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGc                                                                                              >  4:230854/1‑125 (MQ=255)                                                                   gggggtggacacacattggtgtttgggcgcaggccgtcgtaggagcgggtttacccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTgg                                                                     <  2:167615‑M2/71‑1 (MQ=255)                                                                    cgcCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTa                                                                   <  2:125616/149‑1 (MQ=255)                                                                         aaaCACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGttt                                                                                                            <  7:130701/103‑1 (MQ=255)                                                                         aaaCACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGttt                                                                                                            >  8:130701/1‑103 (MQ=255)                                                                           acacCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCcgc                                                            >  7:252161/1‑149 (MQ=255)                                                                                atcttgtgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCgccgg                                                       <  5:33852/145‑1 (MQ=255)                                                                                   gtgtgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCTCTACGCCCGGTTTTTTAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCgccggccg                                                    >  3:5561/1‑149 (MQ=255)                                                                                     gtgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCgccgg                                                       >  6:33852/1‑144 (MQ=255)                                                                                      tgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCa                                                                                 >  3:266060/1‑117 (MQ=255)                                                                                      tgtCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCa                                                                                 <  4:266060/117‑1 (MQ=255)                                                                                         ccACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTg                                              >  1:235923/1‑149 (MQ=255)                                                                                            cccccAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGc                                                                                              >  8:130969/1‑98 (MQ=255)                                                                                            cccccAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGc                                                                                              <  7:130969/98‑1 (MQ=255)                                                                                               ccAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTgcat                                         >  5:198715/1‑148 (MQ=255)                                                                                                cAATCAGGTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTg                                                                      >  8:137527/1‑118 (MQ=255)                                                                                                cAATCAGGTGTGGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTg                                                                      <  7:137527/118‑1 (MQ=255)                                                                                                cAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCCCCCCCGCCAGCATCCAGCTGGTACCCCCGCGCCGGCCGCCCCTGTtcatc                                        >  1:86179/1‑148 (MQ=255)                                                                                                cAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTtcatca                                       <  6:144194/149‑1 (MQ=255)                                                                                                      ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCTGGCCGccc                                                 <  2:105977/133‑1 (MQ=255)                                                                                                      ggTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCTGGCCGccc                                                 >  1:105977/1‑133 (MQ=255)                                                                                                          taggagcgggtttacccgcgaagaggccggcacagcctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCt                             >  1:47541‑M2/39‑149 (MQ=255)                                                                                                             cagcggtcttacccgcgaagaggccggcccaggctGTAAACACTCCGAACCTCACTACGCCCGCCTTTTAAACTCTGTAGCCTCACCCCCGCCACCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAACAACACCTGTc                          <  6:232137‑M2/114‑1 (MQ=255)                                                                                                                         ccgcgaagaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTc                          <  3:207308‑M2/114‑1 (MQ=255)                                                                                                                               agaggccggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTc         >  7:229934‑M2/18‑148 (MQ=255)                                                                                                                                     cggcacaggctGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGcc  <  7:101656‑M2/138‑1 (MQ=255)                                                                                                                                                |                                                                                                                                          TGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCCCGGCACCATTCCACAGCC  >  NC_002947/2472083‑2472363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.