| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2580317 = | 47 (0.930) | 3 (0.060) | 3/244 | NT | 6.2% | coding (633/1098 nt) | PP_2261 | sugar ABC transporter ATP‑binding protein |
| ? | NC_002947 | 2580362 = | 46 (0.970) | coding (678/1098 nt) | PP_2261 | sugar ABC transporter ATP‑binding protein | |||||
TCCTGTTCGACGAGCCGCTGACGGTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTG > NC_002947/2580169‑2580458 | caggcgctcgcacaggccatcgggcagcaccagctggacatcgccgaacaccactgcgcccgcctcggcacgcacgtcgatcaagttcatgcccgggctaccgatgaaataaccaacgaacgtatgccgcggtcgctcgaacagctcgc < 1:121839‑M1/1‑1 (MQ=255) cgctcgcacaggccatcgtgcagcaccagctggacatcgccgaataccactgcgcccgcctcggcacgcacgtcgatcaagttcatgcccgggctaccgatgaattaaccaacgaacgtatgccgcggtcgctcgaacagctcgCGCgg > 4:184951‑M1/145‑149 (MQ=255) gaGCCGCTGACGGTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTgtgcc > 4:55618/1‑144 (MQ=255) cGCTGACGGTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGAACGCGGTGATGCAcggc < 4:141890/149‑1 (MQ=255) gCTGACGGTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCAcggcg < 5:331338/149‑1 (MQ=255) gACGGTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGAc < 8:127731/149‑1 (MQ=255) ggTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTCCGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGc > 8:292242/1‑148 (MQ=255) gTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCAt < 2:215245/149‑1 (MQ=255) tGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATc < 5:300334/149‑1 (MQ=255) gACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCa < 2:96136/149‑1 (MQ=255) aCCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAg > 8:19796/1‑149 (MQ=255) tGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGCCCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGcaca > 5:198866/1‑149 (MQ=255) tGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGcaca > 6:217012/1‑149 (MQ=255) aGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACcg > 8:198668/1‑149 (MQ=255) tGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACcgcg > 6:209430/1‑149 (MQ=255) cgaacaccactgcgcccgcctcggcacgcacgtcgatcaagttcatgcccgggctaccgatgaaataaccaacgaacgtatgccgcggtcgctcgaacagctcgCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACcgc < 6:260999‑M1/44‑1 (MQ=255) cgaacaccactgcgcccgcctcggcacgcacgtcgatcaagttcatgcccgggctaccgatgaaataaccaacgaacgtatgccgcggtcgctcgaacagctcgCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACcgc > 5:260999‑M1/105‑148 (MQ=255) gAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACcgcgcg > 7:89711/1‑149 (MQ=255) ccactgcgcccgcctcggcacgcacgtcgatcaagttcatgcccgggctaccgatgaaataaccaacgaacgtatgccgcggtcgctcgaacagctcgCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCt > 4:116211‑M1/99‑149 (MQ=255) cAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGc < 7:198668/149‑1 (MQ=255) cTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGAcc > 6:247015/1‑149 (MQ=255) tGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACcg > 5:111693/1‑149 (MQ=255) aaGCAGATCCATGAGCAGTTCTACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACcgcg > 2:307371/1‑149 (MQ=255) aaGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACcgc < 4:144128/148‑1 (MQ=255) aTCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCacac > 3:292905/1‑118 (MQ=255) aTCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCacac < 4:292905/118‑1 (MQ=255) aTGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATAcgttc > 1:218128/1‑149 (MQ=255) aTGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATAcgttc > 7:211398/1‑149 (MQ=255) ttCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGa > 8:215089/1‑126 (MQ=255) ttCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGa < 7:215089/126‑1 (MQ=255) aaCATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTAttt < 5:209430/149‑1 (MQ=255) aCATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTAGGAACACAGCGCGAGCTGTTCGAGCTACCGCGGCATACGATCGTTGGTTAttt > 7:247393/1‑148 (MQ=255) tCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATc > 5:236417/1‑149 (MQ=255) ccATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCgg > 7:154055/1‑148 (MQ=255) tGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGc < 6:236417/149‑1 (MQ=255) cTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCgg > 8:208771/1‑149 (MQ=255) aCCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGaa < 7:292242/149‑1 (MQ=255) cccACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAAc < 5:217012/149‑1 (MQ=255) ccaaCGACCAGTTGTAGGCCTCGACGTTCGCCGACAAGATCGCGTTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAAc < 8:247393/146‑1 (MQ=255) ccACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACt > 6:291714/1‑149 (MQ=255) ccACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACt > 3:50494/1‑149 (MQ=255) gACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGAt < 7:19796/149‑1 (MQ=255) cAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGAACGGCGGACGCATCGTCCAGTTCTGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCAGCGCATCAACTTGATCGa > 8:265667/1‑149 (MQ=255) gAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGt > 7:129088/1‑120 (MQ=255) gAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGt < 8:129088/120‑1 (MQ=255) gCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTg < 1:214005/103‑1 (MQ=255) gCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTg > 2:214005/1‑103 (MQ=255) ccTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGcc < 6:198866/149‑1 (MQ=255) aCCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggc > 3:152983/1‑149 (MQ=255) cTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggcgg < 8:89711/149‑1 (MQ=255) gACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAgt < 1:307371/149‑1 (MQ=255) aCAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAgtg < 4:152983/149‑1 (MQ=255) CGCGGTGATGCATGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCGTACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggcg < 4:93796‑M1/133‑1 (MQ=255) CGCGGTGATGCATGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCGTACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggcg > 3:93796‑M1/1‑133 (MQ=255) | TCCTGTTCGACGAGCCGCTGACGGTGATCGACCCGCATCTGAAGTGGAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTG > NC_002947/2580169‑2580458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |