New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2580317 = | 47 (0.930) | 3 (0.060) | 3/244 | NT | 6.2% | coding (633/1098 nt) | PP_2261 | sugar ABC transporter ATP‑binding protein |
? | NC_002947 | 2580362 = | 46 (0.970) | coding (678/1098 nt) | PP_2261 | sugar ABC transporter ATP‑binding protein |
GAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCTGTGCGAGCGCCTGG > NC_002947/2580215‑2580510 | gAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACcgcgcg > 7:89711/1‑149 (MQ=255) ccactgcgcccgcctcggcacgcacgtcgatcaagttcatgcccgggctaccgatgaaataaccaacgaacgtatgccgcggtcgctcgaacagctcgCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCt > 4:116211‑M1/99‑149 (MQ=255) cAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGc < 7:198668/149‑1 (MQ=255) cTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGAcc > 6:247015/1‑149 (MQ=255) tGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACcg > 5:111693/1‑149 (MQ=255) aaGCAGATCCATGAGCAGTTCTACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACcgcg > 2:307371/1‑149 (MQ=255) aaGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACcgc < 4:144128/148‑1 (MQ=255) aTGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATAcgttc > 1:218128/1‑149 (MQ=255) aTGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATAcgttc > 7:211398/1‑149 (MQ=255) ttCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGa > 8:215089/1‑126 (MQ=255) ttCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGa < 7:215089/126‑1 (MQ=255) aaCATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTAttt < 5:209430/149‑1 (MQ=255) aCATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTAGGAACACAGCGCGAGCTGTTCGAGCTACCGCGGCATACGATCGTTGGTTAttt > 7:247393/1‑148 (MQ=255) tCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATc > 5:236417/1‑149 (MQ=255) ccATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCgg > 7:154055/1‑148 (MQ=255) tGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGc < 6:236417/149‑1 (MQ=255) cTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCgg > 8:208771/1‑149 (MQ=255) aCCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGaa < 7:292242/149‑1 (MQ=255) cccACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAAc < 5:217012/149‑1 (MQ=255) ccaaCGACCAGTTGTAGGCCTCGACGTTCGCCGACAAGATCGCGTTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAAc < 8:247393/146‑1 (MQ=255) ccACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACt > 6:291714/1‑149 (MQ=255) ccACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACt > 3:50494/1‑149 (MQ=255) gACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGAt < 7:19796/149‑1 (MQ=255) cAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGAACGGCGGACGCATCGTCCAGTTCTGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCAGCGCATCAACTTGATCGa > 8:265667/1‑149 (MQ=255) gAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGt < 8:129088/120‑1 (MQ=255) gAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGt > 7:129088/1‑120 (MQ=255) gCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTg > 2:214005/1‑103 (MQ=255) gCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTg < 1:214005/103‑1 (MQ=255) ccTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGcc < 6:198866/149‑1 (MQ=255) aCCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggc > 3:152983/1‑149 (MQ=255) cTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggcgg < 8:89711/149‑1 (MQ=255) gACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAgt < 1:307371/149‑1 (MQ=255) aCAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAgtg < 4:152983/149‑1 (MQ=255) agctcgcgcggtgtgccgaactggacgatgcgtccgccgtgcatcaccgcgCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAgtgg > 4:116211‑M2/52‑149 (MQ=255) CGCGGTGATGCATGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCGTACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggcg > 3:93796‑M1/1‑133 (MQ=255) CGCGGTGATGCATGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCGTACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAggcg < 4:93796‑M1/133‑1 (MQ=255) gcggtgtgccgaactggacgatgcgtccgccgtgcatcaccgcgCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCg > 5:260999‑M2/45‑148 (MQ=255) gcggtgtgccgaactggacgatgcgtccgccgtgcatcaccgcgCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCg < 6:260999‑M2/104‑1 (MQ=255) GCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCgg > 7:208771‑M1/1‑149 (MQ=255) GGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCg < 8:206717‑M1/149‑1 (MQ=255) gCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGAt < 1:116707/145‑1 (MQ=255) gCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGAt > 2:116707/1‑145 (MQ=255) cACGGCGGACGCATCGTCCTGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATAGGGTCGTTTGTTATTTCATCGGTAGCCCGGGCATGATCTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCa < 7:265667/149‑1 (MQ=255) aCGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAgtg < 3:125706/131‑1 (MQ=255) aCGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAgtg > 4:125706/1‑131 (MQ=255) aCGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAg > 5:177436/1‑149 (MQ=255) aCGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAg > 8:257466/1‑149 (MQ=255) gCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGtgctg < 8:154055/149‑1 (MQ=255) cATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAAc > 4:310327/1‑88 (MQ=255) cATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAAc < 3:310327/88‑1 (MQ=255) cATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGtgctgc < 6:177436/149‑1 (MQ=255) gTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGGAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGa > 5:312194/1‑149 (MQ=255) ccAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATg > 1:186898/1‑149 (MQ=255) ccAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATg > 2:298780/1‑149 (MQ=255) ttCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCt > 2:121839/1‑149 (MQ=255) ggCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCtgt < 6:312194/148‑1 (MQ=255) ggCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCtgt < 4:50494/148‑1 (MQ=255) ggCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCtgt < 7:206717/148‑1 (MQ=255) ccgcgCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTAATTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTATTCGGCGATGTCCAGCTGGTGCTGCACGATGGCCTGTGCGAgcg > 4:184951‑M2/6‑149 (MQ=255) gCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCTGTGCGAGCGCCTg < 1:121839‑M2/148‑1 (MQ=255) cgAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCTGTGCGAGCGCCTgg < 8:211398/149‑1 (MQ=255) | GAAGCTGCGGCGCAAGCTGAAGCAGATCCATGAGCAGTTCAACATCACCATGATCTACGTCACCCACGACCAGTTGGAGGCCTCGACCTTCGCCGACAAGATCGCGGTGATGCACGGCGGACGCATCGTCCAGTTCGGCACACCGCGCGAGCTGTTCGAGCGACCGCGGCATACGTTCGTTGGTTATTTCATCGGTAGCCCGGGCATGAACTTGATCGACGTGCGTGCCGAGGCGGGCGCAGTGGTGTTCGGCGATGTCCAGCTGGTGCTGCCCGATGGCCTGTGCGAGCGCCTGG > NC_002947/2580215‑2580510 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |