New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2652179	50 (0.990)	3 (0.060)	3/250	NT	5.5%	coding (239/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	NC_002947	= 2652217	54 (1.110)					coding (201/1113 nt)	aroF‑I	tyr‑sensitive phospho‑2‑dehydro‑3‑deoxyheptonate aldolase

ATCCAGGTACGGATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCCTTCTTGAGCTGATCAGGG  >  NC_002947/2652037‑2652325                                                                                                                                               |                                                                                                                                                   aTCCAGGTACGGATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGt                                                                                                                                              >  3:199682/1‑149 (MQ=255)    cAGGTACGGATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACTAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGt                                                                                                                                           <  2:28070/149‑1 (MQ=255)    cAGGTACGGATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGAGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGt                                                                                                                                           <  1:255641/149‑1 (MQ=255)        tACGGATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggat                                                                                                                                       <  4:70863/149‑1 (MQ=255)        tACGGATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggat                                                                                                                                       <  2:299804/149‑1 (MQ=255)           ggATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggatgga                                                                                                                                    <  3:25181/149‑1 (MQ=255)           ggATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggatg                                                                                                                                      >  7:212896/1‑147 (MQ=255)            gATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggatgga                                                                                                                                    <  2:195685/148‑1 (MQ=255)            gATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggatg                                                                                                                                      >  1:195685/1‑146 (MQ=255)                         gCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCg                                                                                                                                            <  1:78526/127‑1 (MQ=255)                         gCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCg                                                                                                                                            >  2:78526/1‑127 (MQ=255)                         gCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggatgg                                                                                                                                     >  2:282919/1‑134 (MQ=255)                         gCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGtggatgg                                                                                                                                     <  1:282919/134‑1 (MQ=255)                            tttCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCacga                                                                                                                   >  4:159868/1‑149 (MQ=255)                              tCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAggg                                                                                                                             >  5:226477/1‑137 (MQ=255)                              tCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAggg                                                                                                                             <  6:226477/137‑1 (MQ=255)                                cAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGaa                                                                                                               <  4:199682/149‑1 (MQ=255)                                      aCGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTgttcgtcgtggtcggcccttgctccatccacgacatcaaggca                                                                                                         <  1:203794‑M1/149‑44 (MQ=255)                                       cGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGa                                                                                                        <  3:159868/149‑1 (MQ=255)                                          tggtgCGCGGCTTTTCGAAGTACACGCGTATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATgg                                                                                                     >  5:329378/1‑149 (MQ=255)                                             tgCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGAAGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTcc                                                                                                  <  5:37280/149‑1 (MQ=255)                                               cgcgGCTTTTCGAAGTACACGCGTATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCtt                                                                                                <  6:329378/149‑1 (MQ=255)                                               cgcgGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCtt                                                                                                >  5:272184/1‑149 (MQ=255)                                               cgcgGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCt                                                                                                 <  8:212896/148‑1 (MQ=255)                                                  ggCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGcc                                                                                             >  1:40884/1‑149 (MQ=255)                                                         cGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTc                                                                                                   >  5:192208/1‑136 (MQ=255)                                                         cGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTc                                                                                                   <  6:192208/136‑1 (MQ=255)                                                         cGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCgag                                                                                       >  3:40413/1‑148 (MQ=255)                                                            aGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAata                                                                                   >  6:184381/1‑149 (MQ=255)                                                             gTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAatat                                                                                  >  8:166210/1‑149 (MQ=255)                                                                 acGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTgcg                                                                              <  6:272184/149‑1 (MQ=255)                                                                         gACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACt                                                                       >  7:69398/1‑148 (MQ=255)                                                                           ccAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTgttcgtcgtggtcggcccttgctccatccacg                                                                                                                    <  1:123606‑M1/101‑33 (MQ=255)                                                                           ccAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTgttcgtcgtggtcggcccttgctccatccacg                                                                                                                    >  2:123606‑M1/1‑69 (MQ=255)                                                                                               acTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCAccagc                                                  >  1:48760/1‑143 (MQ=255)                                                                                                 ttcttcGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTg                                                >  6:12400/1‑147 (MQ=255)                                                                                                 ttcttcGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTg                                                >  6:269669/1‑147 (MQ=255)                                                                                                  tcttaGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAg                                             >  7:79275/1‑149 (MQ=255)                                                                                                      cGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAgg                                            <  7:166210/146‑1 (MQ=255)                                                                                                        gCCAGCACTTTCAGGCGCTCGGCGTATTCGTTGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCtt                                       <  1:68757/149‑1 (MQ=255)                                                                                                              aCTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCt                                 >  7:110682/1‑149 (MQ=255)                                                                                                                tttCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCt                                 >  5:116491/1‑147 (MQ=255)                                                                                                                      gcgcTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCGTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGa                         >  8:175404/1‑149 (MQ=255)                                                                                                                        gcTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGCCCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGTCCTTGGCGCTGAGGCGGagt                       >  4:43737/1‑147 (MQ=255)                                                                                                                        gcTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGAtt                       >  4:278930/1‑149 (MQ=255)                                                                                                                          tCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTc                     >  3:235528/1‑149 (MQ=255)                                                                                                                            ggCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTc                     <  4:40413/147‑1 (MQ=255)                                                                                                                            ggCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTc                     <  4:305224/147‑1 (MQ=255)                                                                                                                              cGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCcttc                 <  4:235528/149‑1 (MQ=255)                                                                                                                              cGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCcttc                 <  8:69398/149‑1 (MQ=255)                                                                                                                               gTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCa                                                       <  2:316838/110‑1 (MQ=255)                                                                                                                               gTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCa                                                       >  1:316838/1‑110 (MQ=255)                                                                                                                                tATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCcttctt               <  8:79275/149‑1 (MQ=255)                                                                                                                                           tGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACaggcagcccacgaatacgccgagcgcctgaaagtgctggccgaagaagtgtccgatacgctgtacctggtcatgcgcgtgtacttcgaaaagccgcgcaccaccgt    <  1:203794‑M2/149‑107 (MQ=255)                                                                                                                                             ccTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCCTTCTTGAGCTGATCAg    <  5:269669/147‑1 (MQ=255)                                                                                                                                             ccTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGAGCAGCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCCTTCTTGAGCTGATAAggg  >  1:61090/1‑149 (MQ=255)                                                                                                                                             ccTTGATGTCGTGGATGGAGCAAGGGCCGACAACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCCTTCTTGAGCTGATCAggg  >  3:91820/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                   ATCCAGGTACGGATCGTTGATCAGGCCTTTCCAGCCGACGGTGGTGCGCGGCTTTTCGAAGTACACGCGCATGACCAGGTACAGCGTATCGGACACTTCTTCGGCCAGCACTTTCAGGCGCTCGGCGTATTCGTGGGCTGCCTTGATGTCGTGGATGGAGCAAGGGCCGACCACGACGAACAGGCGATGGTCCTTGCCGTCGAGAATATTGCGCACCACTTCACGGCCGGCAGTCACGGTCTGCAGGGCCTTGGCGCTGAGGGGGATTTCCTTCTTGAGCTGATCAGGG  >  NC_002947/2652037‑2652325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.