New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2765752	36 (0.710)	3 (0.060)	3/252	NT	7.7%	coding (664/1161 nt)	PP_2419	membrane protein
	?	NC_002947	= 2765785	37 (0.750)					coding (631/1161 nt)	PP_2419	membrane protein

AGCTCATCAGGGTTTGCGTGAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAA  >  NC_002947/2765608‑2765900                                                                                                                                                 |                                                                                                                                                     agCTCATCAGGGTTTGCGTGAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCcgcg                                                                                                                                                   <  2:312693/148‑1 (MQ=255)       tcaGGGTTTGCGTGAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAAc                                                                                                                                            >  2:262168/1‑149 (MQ=255)             tttGCGTGAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAgggg                                                                                                                                      <  3:124555/149‑1 (MQ=255)                  gTGAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAg                                                                                                                                 <  6:220618/149‑1 (MQ=255)                   tGAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAgg                                                                                                                                >  7:36716/1‑149 (MQ=255)                    gAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGc                                                                                                                               >  4:113011/1‑149 (MQ=255)                       ggTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAg                                                                                                                                         >  2:111739/1‑136 (MQ=255)                       ggTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCg                                                                                                                             >  5:155915/1‑148 (MQ=255)                            ggTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGcc                                                                                                                        <  6:270877/148‑1 (MQ=255)                             gTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAAcc                                                                                                                                           <  1:105119/128‑1 (MQ=255)                             gTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAAcc                                                                                                                                           >  2:105119/1‑128 (MQ=255)                                aCCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAgg                                                                                                                   <  3:187583‑M2/149‑3 (MQ=255)                                       cACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTAc                                                                                                            <  4:179295/149‑1 (MQ=255)                                       cACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACCAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCttgggctacggcctgggcccctggttcgcccgcggcagcgat                                                                                                            <  5:279645‑M1/149‑43 (MQ=255)                                         cGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGc                                                                                                          <  4:187583/149‑1 (MQ=255)                                           gTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCGAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAg                                                                                                                                         <  5:292322/116‑1 (MQ=255)                                           gTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAgg                                                                                                                   >  7:69616‑M2/1‑136 (MQ=255)                                           gTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAgg                                                                                                                   <  8:69616‑M2/138‑3 (MQ=255)                                           gTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCAGCGGGCGAACCAg                                                                                                                                         >  6:292322/1‑116 (MQ=255)                                            tGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGa                                                                                                       <  8:36716/149‑1 (MQ=255)                                              ccTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATc                                                                                                     >  2:13898/1‑149 (MQ=255)                                                  aCCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACg                                                                                                 >  6:56292/1‑149 (MQ=255)                                                   ccGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACgg                                                                                                <  5:56292/149‑1 (MQ=255)                                                           gTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCg                                                                                        >  3:130442/1‑149 (MQ=255)                                                            ttGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCgg                                                                                       >  7:57502/1‑149 (MQ=255)                                                                    gcgcAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCAGCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCttgggctacggcctgggcccctggttcgcccgcggcagcga                                                                                                             <  1:103080‑M1/119‑42 (MQ=255)                                                                    gcgcAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCttgggctacggcctgggcccctggttcgcccgcggcagcga                                                                                                             >  2:103080‑M1/1‑78 (MQ=255)                                                                         gcagGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTgcg                                                                           >  6:322265/1‑148 (MQ=255)                                                                          cagGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTgcg                                                                           >  5:158811/1‑147 (MQ=255)                                                                               cGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcaggtgc                                                                    <  7:60821/149‑1 (MQ=255)                                                                                 aaGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcaggtgcag                                                                  <  6:155915/149‑1 (MQ=255)                                                                                       agcagcGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTc                                                            <  8:57502/149‑1 (MQ=255)                                                                                             gcgAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGaaaa                                                      <  5:322265/149‑1 (MQ=255)                                                                                               gAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACg                                                    >  7:119381/1‑149 (MQ=255)                                                                                                  cAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACgcca                                                 <  3:113011/149‑1 (MQ=255)                                                                                                   aaaCCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcag                                                                        >  5:299094/1‑125 (MQ=255)                                                                                                   aaaCCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcag                                                                        <  6:299094/125‑1 (MQ=255)                                                                                                             ccaGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGa                                      >  1:89481/1‑149 (MQ=255)                                                                                                                      aTTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAg                              >  8:95730/1‑148 (MQ=255)                                                                                                                         gCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGAtt                          >  8:258116/1‑149 (MQ=255)                                                                                                                                  ggCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACgg                  <  4:130442/148‑1 (MQ=255)                                                                                                                                         aTCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAggcagcgatgccggccaacgccagcaatacctgctggtggcgggtttgctcgcgctgcttggcttggtcctgctgcgcatgttcaacggttacggtgaggcaccgtg          <  5:279645‑M2/149‑108 (MQ=255)                                                                                                                                          tCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAggcagcgatgccggccaacgccagcaatacctgctggtggcgggtttgctcgcgctgcttggcttcgtcctgctgcgc                                       >  2:103080‑M2/1‑41 (MQ=255)                                                                                                                                          tCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAggcagcgatgccggccaacgccagcaatacctgctgctggcgggtttgctcgcgctgcttggcttcgtcctgctgcgc                                       <  1:103080‑M2/119‑79 (MQ=255)                                                                                                                                            gCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAggg       <  8:119381/149‑1 (MQ=255)                                                                                                                                            gCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAgg        <  7:258116/148‑1 (MQ=255)                                                                                                                                                ccttgggctacggcctgggcccctggttcgcccgcggcagcgatgccggccaacgccagcaatacctgctggtggcgggtttgctcgcgctgcttggcttcgtcctgctgcgcatgttcaacggttacggtgaggcaccgtggagcggt   <  3:187583‑M1/149‑148 (MQ=255)                                                                                                                                                ccttgggctacggcctgggcccctggttcgcccgcggcagcgatgccggccaacgccagcaatacctgctggtggcgggtttgctcgcgctgcttggcttcgtcctgctgcgcatgttcaacggttacggtgaggcac              >  7:69616‑M1/1‑2 (MQ=255)                                                                                                                                                ccttgggctacggcctgggcccctggttcgcccgcggcagcgatgccggccaacgccagcaatacctgctggtggcgggtttgctcgcgctgcttggcttcgtcctgctgcgcatgttcaacggttacggtgaggcac              <  8:69616‑M1/138‑137 (MQ=255)                                                                                                                                                ccGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCt     <  1:13898/147‑1 (MQ=255)                                                                                                                                                 cgcgGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGATTCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGaa  <  1:262168/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     AGCTCATCAGGGTTTGCGTGAAGGTTGGGTAACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAA  >  NC_002947/2765608‑2765900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.