New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2765752	36 (0.710)	3 (0.060)	3/252	NT	7.7%	coding (664/1161 nt)	PP_2419	membrane protein
	?	NC_002947	= 2765785	37 (0.750)					coding (631/1161 nt)	PP_2419	membrane protein

ACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGCCAAAGTGCAGGCCGTCGAGC  >  NC_002947/2765639‑2765927                                                                                                                                                   |                                                                                                                                               aCCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAgg                                                                                                                                              <  3:187583‑M2/149‑3 (MQ=255)        cACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTAc                                                                                                                                       <  4:179295/149‑1 (MQ=255)          cGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGc                                                                                                                                     <  4:187583/149‑1 (MQ=255)            gTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAgg                                                                                                                                              <  8:69616‑M2/138‑3 (MQ=255)            gTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAgg                                                                                                                                              >  7:69616‑M2/1‑136 (MQ=255)             tGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGa                                                                                                                                  <  8:36716/149‑1 (MQ=255)               ccTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATc                                                                                                                                >  2:13898/1‑149 (MQ=255)                   aCCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACg                                                                                                                            >  6:56292/1‑149 (MQ=255)                    ccGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACgg                                                                                                                           <  5:56292/149‑1 (MQ=255)                            gTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCg                                                                                                                   >  3:130442/1‑149 (MQ=255)                             ttGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCgg                                                                                                                  >  7:57502/1‑149 (MQ=255)                                          gcagGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTgcg                                                                                                      >  6:322265/1‑148 (MQ=255)                                           cagGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTgcg                                                                                                      >  5:158811/1‑147 (MQ=255)                                                cGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcaggtgc                                                                                               <  7:60821/149‑1 (MQ=255)                                                  aaGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcaggtgcag                                                                                             <  6:155915/149‑1 (MQ=255)                                                        agcagcGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTc                                                                                       <  8:57502/149‑1 (MQ=255)                                                              gcgAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGaaaa                                                                                 <  5:322265/149‑1 (MQ=255)                                                                gAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACg                                                                               >  7:119381/1‑149 (MQ=255)                                                                   cAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACgcca                                                                            <  3:113011/149‑1 (MQ=255)                                                                    aaaCCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcag                                                                                                   <  6:299094/125‑1 (MQ=255)                                                                    aaaCCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCgcag                                                                                                   >  5:299094/1‑125 (MQ=255)                                                                              ccaGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGa                                                                 >  1:89481/1‑149 (MQ=255)                                                                                       aTTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAg                                                         >  8:95730/1‑148 (MQ=255)                                                                                          gCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGAtt                                                     >  8:258116/1‑149 (MQ=255)                                                                                                   ggCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACgg                                             <  4:130442/148‑1 (MQ=255)                                                                                                          aTCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAggcagcgatgccggccaacgccagcaatacctgctggtggcgggtttgctcgcgctgcttggcttggtcctgctgcgcatgttcaacggttacggtgaggcaccgtg                                     <  5:279645‑M2/149‑108 (MQ=255)                                                                                                           tCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAggcagcgatgccggccaacgccagcaatacctgctggtggcgggtttgctcgcgctgcttggcttcgtcctgctgcgc                                                                  >  2:103080‑M2/1‑41 (MQ=255)                                                                                                           tCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAggcagcgatgccggccaacgccagcaatacctgctgctggcgggtttgctcgcgctgcttggcttcgtcctgctgcgc                                                                  <  1:103080‑M2/119‑79 (MQ=255)                                                                                                             gCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAggg                                  <  8:119381/149‑1 (MQ=255)                                                                                                             gCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAgg                                   <  7:258116/148‑1 (MQ=255)                                                                                                                 ccGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCt                                <  1:13898/147‑1 (MQ=255)                                                                                                                  cgcgGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGATTCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGaa                             <  1:262168/149‑1 (MQ=255)                                                                                                                     gggCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATcc                          <  6:158811/149‑1 (MQ=255)                                                                                                                      ggCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCa                         <  7:95730/149‑1 (MQ=255)                                                                                                                         gAACCAGGGGCCCAGGCCGTAGCCCAGGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGc                      >  5:36469/1‑149 (MQ=255)                                                                                                                         gAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCt                                <  7:280316/139‑1 (MQ=255)                                                                                                                         gAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCt                                >  8:280316/1‑139 (MQ=255)                                                                                                                                gggCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAg                                    <  6:59691/128‑1 (MQ=255)                                                                                                                                gggCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAg                                    >  5:59691/1‑128 (MQ=255)                                                                                                                                  gCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAggg                                  <  2:170263/128‑1 (MQ=255)                                                                                                                                  gCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAggg                                  >  1:170263/1‑128 (MQ=255)                                                                                                                                              gCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGCAAAAGTGCAg            >  4:223870/1‑138 (MQ=255)                                                                                                                                              gCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGCAAAAGTGCAg            <  3:223870/138‑1 (MQ=255)                                                                                                                                                ccAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGCCAAAGTGCAGGCCGTCGAGc  <  4:229554/146‑1 (MQ=255)                                                                                                                                                ccAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGCCAAAGTGCAGGCCGTCGAGc  >  3:229554/1‑146 (MQ=255)                                                                                                                                                  aaGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGCCAAAGTGCAGGCCGTCGAGc  >  5:222428/1‑144 (MQ=255)                                                                                                                                                  aaGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACCGCACATGCAGGGCTGAATCCACGCCAAAGTGCAGGCCGTCGAGc  <  6:222428/144‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               ACCGCTCCACGGTGCCTCACCGTAACCGTTGAACATGCGCAGCAGGACGAAGCCAAGCAGCGCGAGCAAACCCGCCACCAGCAGGTATTGCTGGCGTTGGCCGGCATCGCTGCCGCGGGCGAACCAGGGGCCCAGGCCGTAGCCCAAGGCGATTACGCCGATCCACGGCAGCACCGGGTAAGACGTGCGCAGGTGCAGGTTTTCGGAAAACGCCAGCCAGCCGCGATCATGCAGGATTGCCCACGGCACATGCAGGGCTGAATCCACGCCAAAGTGCAGGCCGTCGAGC  >  NC_002947/2765639‑2765927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.