New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3116213 | 42 (0.830) | 4 (0.090) | 4/240 | NT | 8.6% | coding (951/1527 nt) | PP_2732 | hypothetical protein |
? | NC_002947 | = 3116255 | 46 (0.980) | coding (993/1527 nt) | PP_2732 | hypothetical protein |
ATCGGCCTTCTGGATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGA > NC_002947/3116070‑3116361 | aTCGGCCTTCTGGATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGcc > 6:117372/1‑149 (MQ=255) gCCTTCTGGATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCa > 5:244925/1‑149 (MQ=255) ccTTCTGGATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCat < 6:244925/149‑1 (MQ=255) cTTCTGGATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCg > 1:24772/1‑144 (MQ=255) tCTGGATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATg > 1:32808/1‑149 (MQ=255) gATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGc < 5:213414/136‑1 (MQ=255) gATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGc > 6:213414/1‑136 (MQ=255) gATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCgg < 4:285556/149‑1 (MQ=255) tcgtcTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATc < 6:173473/149‑1 (MQ=255) gtcTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCAc < 4:77216/149‑1 (MQ=255) tcTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCAcc < 7:90885/149‑1 (MQ=255) gACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgc < 2:227251‑M2/149‑3 (MQ=255) ccTGGGGGGTGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgcca > 2:8159‑M2/1‑140 (MQ=255) actGGCGCGAGGGTCGGGTTCCTCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGAATGCCGGCATATGCCGGGCTCAATCACCTTAACAATCACCGTgcgctgc < 2:228360‑M2/146‑8 (MQ=255) tGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCa < 7:292122/105‑1 (MQ=255) tGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCa > 8:292122/1‑105 (MQ=255) gggctcggggcgggggCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGAGCGGCTGGCGTGAGTACGTGCGTGGCATCTATTTGCAGCGCccggtgattgttcaggggattgagcccggcatatgccggcatgcgctgccaatag < 8:197346‑M1/143‑56 (MQ=255) gcgcGAGGGGCGGGTGCCGCTCAATGCGGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAAt > 4:265768/1‑149 (MQ=255) gcgcGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTAGCAGCGCccggtgattgttcaggtgattgagcccggcatatgccggcatgcgctgccaa > 7:197346‑M1/1‑94 (MQ=255) gggTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCccggtgattgttcaggtgattgagcccggcatatgccggcatgcgctgccaa < 2:140210‑M1/135‑53 (MQ=255) gggTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCccggtgattgttcaggtgattgagcccggcatatgccggcatgcgctgccaa > 1:140210‑M1/1‑83 (MQ=255) ggTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCg < 5:232660/149‑1 (MQ=255) aaTGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCg > 6:154916/1‑139 (MQ=255) aaTGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCg < 5:154916/139‑1 (MQ=255) gCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCAt > 7:284412/1‑149 (MQ=255) ccGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATgcgc > 4:99781/1‑149 (MQ=255) aaGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTg > 5:276069/1‑148 (MQ=255) gCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATg < 1:313199/149‑1 (MQ=255) ttCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCaa < 2:32808/149‑1 (MQ=255) cGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGc > 8:86998/1‑149 (MQ=255) gCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGAcc < 7:86998/149‑1 (MQ=255) gCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCg > 1:124575/1‑137 (MQ=255) gCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCg < 2:124575/137‑1 (MQ=255) gTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCgg > 6:91204/1‑149 (MQ=255) gTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTgg < 5:91204/149‑1 (MQ=255) tACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTggg < 8:284412/149‑1 (MQ=255) tACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTggg < 6:276069/149‑1 (MQ=255) ggCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGgcgc > 1:118381/1‑112 (MQ=255) ggCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGgcgc < 2:118381/112‑1 (MQ=255) ggCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAAATCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGTCTACGCTCa > 5:296499/1‑149 (MQ=255) gCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACt > 4:205414/1‑78 (MQ=255) gCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACt < 3:205414/78‑1 (MQ=255) gCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCAc > 2:235504/1‑149 (MQ=255) cATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCAcc < 3:262499/149‑1 (MQ=255) aTCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCa > 7:45913/1‑149 (MQ=255) cTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCCCCTGAACAATCACCGGgcgctgcaaatagatgccacgcacgtactcacgccagccgctcagctggcgaatgaagccttcggctgcattgagcggcccccgccccgagccc < 8:197346‑M2/149‑95 (MQ=255) aTTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTgg < 4:266538/132‑1 (MQ=255) aTTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTgg > 3:266538/1‑132 (MQ=255) ttGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgctaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcacccgcccctcgcgc > 7:197346‑M2/1‑52 (MQ=255) ttGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgccaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcaccc < 2:140210‑M2/135‑84 (MQ=255) ttGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgccaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcaccc > 1:140210‑M2/1‑52 (MQ=255) tGGCAGCGCccggtgattgttcaggtgattgagcccggcatatgccggcatgcgctgccaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcacccgccccaccccccagg > 2:8159‑M1/1‑9 (MQ=255) ggCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAg > 3:51018/1‑149 (MQ=255) ggCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAg > 5:119607/1‑149 (MQ=255) gCAGCGCacggtgattgttaaggtgattgagcccggcatatgccggcattcgctgccaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagaggaacccgaccctcgcgccagt < 2:228360‑M1/147‑141 (MQ=255) gCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGc > 2:263061/1‑149 (MQ=255) gCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGc > 3:152565/1‑149 (MQ=255) gCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGc > 6:87138/1‑149 (MQ=255) aGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCgg > 8:258251/1‑149 (MQ=255) cgcATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGtt < 1:235504/149‑1 (MQ=255) gcccggtgattgttcaggtgattgagcccggcatatgccggcatgcgctgccaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcacccgcccctcgcgccaggctttgtc < 2:227251‑M1/149‑148 (MQ=255) cATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGa < 7:258251/149‑1 (MQ=255) | ATCGGCCTTCTGGATGTGCGTCGTCTGTGCGACGACGTCGACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGA > NC_002947/3116070‑3116361 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |