New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3116213	42 (0.830)	4 (0.090)	4/240	NT	8.6%	coding (951/1527 nt)	PP_2732	hypothetical protein
	?	NC_002947	= 3116255	46 (0.980)					coding (993/1527 nt)	PP_2732	hypothetical protein

GACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTGCTGGCCGGTATCG  >  NC_002947/3116109‑3116397                                                                                                                                                   |                                                                                                                                               gACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgc                                                                                                                                              <  2:227251‑M2/149‑3 (MQ=255)        ccTGGGGGGTGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgcca                                                                                                                                       >  2:8159‑M2/1‑140 (MQ=255)        actGGCGCGAGGGTCGGGTTCCTCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGAATGCCGGCATATGCCGGGCTCAATCACCTTAACAATCACCGTgcgctgc                                                                                                                                         <  2:228360‑M2/146‑8 (MQ=255)            gcgcGAGGGGCGGGTGCCGCTCAATGCGGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAAt                                                                                                                                   >  4:265768/1‑149 (MQ=255)                        ggTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCg                                                                                                                       <  5:232660/149‑1 (MQ=255)                                  aaTGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCg                                                                                                                       >  6:154916/1‑139 (MQ=255)                                  aaTGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCg                                                                                                                       <  5:154916/139‑1 (MQ=255)                                     gCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCAt                                                                                                          >  7:284412/1‑149 (MQ=255)                                         ccGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATgcgc                                                                                                      >  4:99781/1‑149 (MQ=255)                                            aaGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTg                                                                                                    >  5:276069/1‑148 (MQ=255)                                               gCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATg                                                                                                <  1:313199/149‑1 (MQ=255)                                                     ttCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCaa                                                                                          <  2:32808/149‑1 (MQ=255)                                                       cGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGc                                                                                        >  8:86998/1‑149 (MQ=255)                                                                    gCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGAcc                                                                           <  7:86998/149‑1 (MQ=255)                                                                        gCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCg                                                                                   >  1:124575/1‑137 (MQ=255)                                                                        gCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCg                                                                                   <  2:124575/137‑1 (MQ=255)                                                                          gTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCgg                                                                     >  6:91204/1‑149 (MQ=255)                                                                              gTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTgg                                                                 <  5:91204/149‑1 (MQ=255)                                                                               tACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTggg                                                                <  6:276069/149‑1 (MQ=255)                                                                               tACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTggg                                                                <  8:284412/149‑1 (MQ=255)                                                                                        ggCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGgcgc                                                                                            >  1:118381/1‑112 (MQ=255)                                                                                        ggCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGgcgc                                                                                            <  2:118381/112‑1 (MQ=255)                                                                                        ggCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAAATCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGTCTACGCTCa                                                       >  5:296499/1‑149 (MQ=255)                                                                                         gCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACt                                                                                                                             <  3:205414/78‑1 (MQ=255)                                                                                         gCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACt                                                                                                                             >  4:205414/1‑78 (MQ=255)                                                                                         gCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCAc                                                      >  2:235504/1‑149 (MQ=255)                                                                                          cATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCAcc                                                     <  3:262499/149‑1 (MQ=255)                                                                                           aTCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCa                                                    >  7:45913/1‑149 (MQ=255)                                                                                             cTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCCCCTGAACAATCACCGGgcgctgcaaatagatgccacgcacgtactcacgccagccgctcagctggcgaatgaagccttcggctgcattgagcggcccccgccccgagccc                                                  <  8:197346‑M2/149‑95 (MQ=255)                                                                                               aTTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTgg                                                                 <  4:266538/132‑1 (MQ=255)                                                                                               aTTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTgg                                                                 >  3:266538/1‑132 (MQ=255)                                                                                                ttGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgctaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcacccgcccctcgcgc                                                  >  7:197346‑M2/1‑52 (MQ=255)                                                                                                ttGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgccaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcaccc                                                             >  1:140210‑M2/1‑52 (MQ=255)                                                                                                ttGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGgcgctgccaatagatgccacgcacgtactcacgccagccgatcagctggcgaatgaagccttcggctgcattgagcggcaccc                                                             <  2:140210‑M2/135‑84 (MQ=255)                                                                                                  ggCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAg                                             >  5:119607/1‑149 (MQ=255)                                                                                                  ggCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAg                                             >  3:51018/1‑149 (MQ=255)                                                                                                   gCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGc                                            >  6:87138/1‑149 (MQ=255)                                                                                                   gCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGc                                            >  2:263061/1‑149 (MQ=255)                                                                                                   gCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGc                                            >  3:152565/1‑149 (MQ=255)                                                                                                     aGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCgg                                          >  8:258251/1‑149 (MQ=255)                                                                                                       cgcATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGtt                                        <  1:235504/149‑1 (MQ=255)                                                                                                         cATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGa                                      <  7:258251/149‑1 (MQ=255)                                                                                                              cGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGt                                  >  6:36918/1‑148 (MQ=255)                                                                                                                     tGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGtt                                                                   <  4:54084/108‑1 (MQ=255)                                                                                                                     tGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGtt                                                                   >  3:54084/1‑108 (MQ=255)                                                                                                                      gCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCaa                         >  6:13565/1‑149 (MQ=255)                                                                                                                                  cACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTGCt             >  8:170980/1‑149 (MQ=255)                                                                                                                                    ccTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTGCTgg           >  1:99305/1‑149 (MQ=255)                                                                                                                                     cTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTg               <  6:246045/144‑1 (MQ=255)                                                                                                                                     cTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTg               >  5:246045/1‑144 (MQ=255)                                                                                                                                      tGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTGCTGGcc         >  8:276626/1‑149 (MQ=255)                                                                                                                                        aaCAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATc                                                <  2:111109/108‑1 (MQ=255)                                                                                                                                        aaCAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATc                                                >  1:111109/1‑108 (MQ=255)                                                                                                                                             tCACCGGGCGCTGCAAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACACTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTGCTGGCCGGTATCg  >  6:55641/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                               GACAAAGCCTGGCGCGAGGGGCGGGTGCCGCTCAATGCAGCCGAAGGCTTCATTCGCCAGCTGATCGGCTGGCGTGAGTACGTGCGTGGCATCTATTGGCAGCGCATGCCGGCATATGCCGGGCTCAATCACCTGAACAATCACCGGGCGCTGCCAGAATTCTACTGGACCGGGCGCACCCGCATGCGCTGCATGGCGCAAGCCATCGGGCAGACCCTGCGGTTGGGCTACGCTCACCATATCCAGCGGTTGATGGTTACCGGCAACTTCGCCTTGCTGGCCGGTATCG  >  NC_002947/3116109‑3116397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.