New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3206141	43 (0.850)	3 (0.060)	3/246	NT	6.9%	coding (1445/1647 nt)	PP_2811	hypothetical protein
	?	NC_002947	= 3206165	40 (0.830)					coding (1469/1647 nt)	PP_2811	hypothetical protein

AATGCCTGGCAACTGGATCCTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTAC  >  NC_002947/3205996‑3206286                                                                                                                                                   |                                                                                                                                                  aaTGCCTGGCAACTGGATCCTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCAAAGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGcgctcgct                                                                                                                                                >  1:267954/1‑149 (MQ=255)      cTGGCAACTGGATCCTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTggcg                                                                                                                                           <  4:69343/149‑1 (MQ=255)           aaCTGGATCCTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTggcgggcg                                                                                                                                       >  5:232790/1‑148 (MQ=255)                gATCCTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACg                                                                                                                                   <  8:25460/147‑1 (MQ=255)                gATCCTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGcc                                                                                                                                 >  6:199776/1‑149 (MQ=255)                    cTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGaa                                                                                                                              <  5:199776/148‑1 (MQ=255)                          cAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCTACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagc                                                                                                                       >  5:115342‑M2/1‑145 (MQ=255)                           accgcccAACTCCCGTGGCGACAAGCCCGCGGCGGGCATCAACCTGGACTTCAGGCTGACCTATGACGGCACGTTGCCGCCGGGCTGGATAGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagc                                                                                                                       >  1:92993‑M2/3‑145 (MQ=255)                               cccAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCaggttcggcgttcgcccgccaagcgagcgcgag                                                                                                                  <  8:28761‑M1/149‑34 (MQ=255)                               cccAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCAc                                                                                                                  <  1:271465/149‑1 (MQ=255)                                ccAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCaggttcggcgttcgcccgccaagcgagcgcgagt                                                                                                                 <  5:81828‑M1/149‑35 (MQ=255)                                    gTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCaggttcggcgttcgcccgccaagcgagcgcgagtagaa                                                                                                             <  2:96898‑M1/149‑39 (MQ=255)                                       ccGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCCCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCAcc                                                                                                           >  4:64689/1‑148 (MQ=255)                                              gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGTGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGAcgc                                                                                                   <  5:286142/149‑1 (MQ=255)                                              gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCtt                                                                                                               >  2:111615/1‑137 (MQ=255)                                              gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGAcgc                                                                                                   >  3:122501/1‑149 (MQ=255)                                              gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGAcgc                                                                                                   <  4:183343/149‑1 (MQ=255)                                                cAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGa                                                                                                 <  4:122501/149‑1 (MQ=255)                                                 aaGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGag                                                                                                >  2:167844/1‑149 (MQ=255)                                                 aaGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGag                                                                                                <  5:23865/149‑1 (MQ=255)                                                      cTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAgcagca                                                                                           >  2:73730/1‑149 (MQ=255)                                                          tcgGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTggcgggcg                                                                                                                                       <  7:213048/101‑1 (MQ=255)                                                          tcgGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTggcgggcg                                                                                                                                       >  8:213048/1‑101 (MQ=255)                                                              gCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGCTCACGCCCCGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTg                                                                                   >  8:64935/1‑149 (MQ=255)                                                                  cAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTAcc                                                                               >  6:330027/1‑149 (MQ=255)                                                                   aaCCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTATACTCGCGCTCGCTTGGCGGGCTAACGCCTAACCTGAGCGCCACCTTCACCGACGACGCGAGCAGCATGAACCTGTACCt                                                                              <  1:167844/149‑1 (MQ=255)                                                                            ttCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGACCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCg                                                                      >  5:104580/1‑148 (MQ=255)                                                                            ttCAGCCTGACCTATCACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACCCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCg                                                                      >  8:51385/1‑148 (MQ=255)                                                                              cAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGagcagc                                                                                            <  6:264071/124‑1 (MQ=255)                                                                              cAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGagcagc                                                                                            >  5:264071/1‑124 (MQ=255)                                                                               aGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTAc                                                                   <  2:267954/148‑1 (MQ=255)                                                                                  cTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAAc                                                                                      <  1:248604/126‑1 (MQ=255)                                                                                  cTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAAc                                                                                      >  2:248604/1‑126 (MQ=255)                                                                                   tGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTa                                                                    >  5:319019/1‑143 (MQ=255)                                                                                   tGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTa                                                                    <  6:319019/143‑1 (MQ=255)                                                                                        tATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCGGAACCTGCGCGCCCCCTTCACCGAAGACGCGAGCACAATGAACCTGTACCTGAATTTCGAACGAAACCCGGc                                                         >  7:42471/1‑149 (MQ=255)                                                                                                cACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGc                                                 <  6:232790/149‑1 (MQ=255)                                                                                                 aCGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCa                                                <  1:73730/149‑1 (MQ=255)                                                                                                         gcCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTccc                                        >  5:12600/1‑149 (MQ=255)                                                                                                          gcGGGGTGGC‑AGGGCCCGGCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCt                                       <  8:42471/148‑1 (MQ=255)                                                                                                              gCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAAc                                   <  6:293009/149‑1 (MQ=255)                                                                                                                  gC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGTGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCa                                                       <  5:135777/125‑1 (MQ=255)                                                                                                                  gC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCa                                                       >  6:135777/1‑125 (MQ=255)                                                                                                                     aGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTAcgc                              >  4:97239/1‑148 (MQ=255)                                                                                                                      ggTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACATGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTAcgcg                             >  7:147099/1‑148 (MQ=255)                                                                                                                            gCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCa                      >  5:278124/1‑149 (MQ=255)                                                                                                                              cctgCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTGCGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATg                    <  7:64935/146‑1 (MQ=255)                                                                                                                                   gTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGggcgg               <  6:12600/149‑1 (MQ=255)                                                                                                                                      ttctACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagcgcgagtagaagacgccgggcgtgacctgccagcccggcagcaacgtgccgtcataggtcaggctgaagtccaggttgatgcccgacgaggtcttgtcgccacgggac            <  2:96898‑M2/149‑112 (MQ=255)                                                                                                                                          aCTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagcgcgagtagaagacgccgggcgtgacctgccagcccggcagcaacgtgccgtcataggtcaggctgaagtccaggttgatgcccgacgaggtcttgtcgccacgggacttgg        <  5:81828‑M2/149‑116 (MQ=255)                                                                                                                                           cTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagcgcgagtagaagacgccgggcgtgacctgccagcccggcagcaacgtgccgtcataggtcaggctgaagtccaggttgatgcccgacgaggtcttgtcgccacgggacttggg       <  8:28761‑M2/149‑117 (MQ=255)                                                                                                                                              gcgcTCGCTTGGCGGGCGATCTCCGTACGTGAGCGCCAGCTTCACCGATGACGAGATCAGCATGAACCTGTACCTGAATTTCGTACGAAACGCGGCCATTTTGCAGATTTCCCTCAACTACGCGAAGTTCATGGTCGGCGAAACCCCCt    <  6:104580/149‑1 (MQ=255)                                                                                                                                                gcTCaggttcggcgttcgcccgccaagcgagcgcgagtagaagacgccgggcgtgacctgccagcccggcagcaacgtgccgtcataggtcaggctgaagtccaggtagatgcccgacgaggtcttgtcgccacgggacttgggcgctg  >  5:115342‑M1/1‑4 (MQ=255)                                                                                                                                                gcTCaggttcggcgttcgcccgccaagcgagcgcgagtagaagacgccgggcgtgacctatccagcccggcggcaacgtgccgtcataggtcagcctgaagtccaggttgatgcccgccgcgggcttgtcgccacgggagttgggcggt  >  1:92993‑M1/1‑4 (MQ=255)                                                                                                                                                   |                                                                                                                                                  AATGCCTGGCAACTGGATCCTGCGACAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTAC  >  NC_002947/3205996‑3206286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.