New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3206141	43 (0.850)	3 (0.060)	3/246	NT	6.9%	coding (1445/1647 nt)	PP_2811	hypothetical protein
	?	NC_002947	= 3206165	40 (0.830)					coding (1469/1647 nt)	PP_2811	hypothetical protein

CAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTACGACCAGCTTTATCGTGACCGC  >  NC_002947/3206021‑3206307                                                                                                                                                  |                                                                                                                                               cAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCTACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagc                                                                                                                                            >  5:115342‑M2/1‑145 (MQ=255)  accgcccAACTCCCGTGGCGACAAGCCCGCGGCGGGCATCAACCTGGACTTCAGGCTGACCTATGACGGCACGTTGCCGCCGGGCTGGATAGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagc                                                                                                                                            >  1:92993‑M2/3‑145 (MQ=255)      cccAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCAc                                                                                                                                       <  1:271465/149‑1 (MQ=255)              ccGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCCCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCAcc                                                                                                                                >  4:64689/1‑148 (MQ=255)                     gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGTGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGAcgc                                                                                                                        <  5:286142/149‑1 (MQ=255)                     gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCtt                                                                                                                                    >  2:111615/1‑137 (MQ=255)                     gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGAcgc                                                                                                                        <  4:183343/149‑1 (MQ=255)                     gACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGAcgc                                                                                                                        >  3:122501/1‑149 (MQ=255)                       cAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGa                                                                                                                      <  4:122501/149‑1 (MQ=255)                        aaGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGag                                                                                                                     >  2:167844/1‑149 (MQ=255)                        aaGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGag                                                                                                                     <  5:23865/149‑1 (MQ=255)                             cTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAgcagca                                                                                                                >  2:73730/1‑149 (MQ=255)                                     gCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGCTCACGCCCCGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTg                                                                                                        >  8:64935/1‑149 (MQ=255)                                         cAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTAcc                                                                                                    >  6:330027/1‑149 (MQ=255)                                          aaCCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTATACTCGCGCTCGCTTGGCGGGCTAACGCCTAACCTGAGCGCCACCTTCACCGACGACGCGAGCAGCATGAACCTGTACCt                                                                                                   <  1:167844/149‑1 (MQ=255)                                                   ttCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGACCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCg                                                                                           >  5:104580/1‑148 (MQ=255)                                                   ttCAGCCTGACCTATCACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACCCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCg                                                                                           >  8:51385/1‑148 (MQ=255)                                                     cAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGagcagc                                                                                                                 >  5:264071/1‑124 (MQ=255)                                                     cAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGagcagc                                                                                                                 <  6:264071/124‑1 (MQ=255)                                                      aGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTAc                                                                                        <  2:267954/148‑1 (MQ=255)                                                         cTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAAc                                                                                                           <  1:248604/126‑1 (MQ=255)                                                         cTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAAc                                                                                                           >  2:248604/1‑126 (MQ=255)                                                          tGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTa                                                                                         <  6:319019/143‑1 (MQ=255)                                                          tGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTa                                                                                         >  5:319019/1‑143 (MQ=255)                                                               tATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCGGAACCTGCGCGCCCCCTTCACCGAAGACGCGAGCACAATGAACCTGTACCTGAATTTCGAACGAAACCCGGc                                                                              >  7:42471/1‑149 (MQ=255)                                                                       cACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGc                                                                      <  6:232790/149‑1 (MQ=255)                                                                        aCGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCa                                                                     <  1:73730/149‑1 (MQ=255)                                                                                gcCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTccc                                                             >  5:12600/1‑149 (MQ=255)                                                                                 gcGGGGTGGC‑AGGGCCCGGCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCt                                                            <  8:42471/148‑1 (MQ=255)                                                                                     gCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAAc                                                        <  6:293009/149‑1 (MQ=255)                                                                                         gC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGTGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCa                                                                            <  5:135777/125‑1 (MQ=255)                                                                                         gC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCa                                                                            >  6:135777/1‑125 (MQ=255)                                                                                            aGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTAcgc                                                   >  4:97239/1‑148 (MQ=255)                                                                                             ggTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACATGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTAcgcg                                                  >  7:147099/1‑148 (MQ=255)                                                                                                   gCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCa                                           >  5:278124/1‑149 (MQ=255)                                                                                                     cctgCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTGCGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATg                                         <  7:64935/146‑1 (MQ=255)                                                                                                          gTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGggcgg                                    <  6:12600/149‑1 (MQ=255)                                                                                                             ttctACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagcgcgagtagaagacgccgggcgtgacctgccagcccggcagcaacgtgccgtcataggtcaggctgaagtccaggttgatgcccgacgaggtcttgtcgccacgggac                                 <  2:96898‑M2/149‑112 (MQ=255)                                                                                                                 aCTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagcgcgagtagaagacgccgggcgtgacctgccagcccggcagcaacgtgccgtcataggtcaggctgaagtccaggttgatgcccgacgaggtcttgtcgccacgggacttgg                             <  5:81828‑M2/149‑116 (MQ=255)                                                                                                                  cTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTgagcgcgagtagaagacgccgggcgtgacctgccagcccggcagcaacgtgccgtcataggtcaggctgaagtccaggttgatgcccgacgaggtcttgtcgccacgggacttggg                            <  8:28761‑M2/149‑117 (MQ=255)                                                                                                                     gcgcTCGCTTGGCGGGCGATCTCCGTACGTGAGCGCCAGCTTCACCGATGACGAGATCAGCATGAACCTGTACCTGAATTTCGTACGAAACGCGGCCATTTTGCAGATTTCCCTCAACTACGCGAAGTTCATGGTCGGCGAAACCCCCt                         <  6:104580/149‑1 (MQ=255)                                                                                                                                    gcgAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTACGACCAGCTTTATc          <  3:97239/149‑1 (MQ=255)                                                                                                                                     cgAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTACGACCAGCTTTATCg         >  1:262375/1‑149 (MQ=255)                                                                                                                                      gAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTACGACCAGCTTTATCGt        >  1:262400/1‑149 (MQ=255)                                                                                                                                          gCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTACGACCAGCTTTATCGTGAcc    >  3:186592/1‑149 (MQ=255)                                                                                                                                            cGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTACGACCAGCTTTATCGTGACcgc  <  6:278124/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               CAGCGCCCAAGTCCCGTGGCGACAAGACCTCGTCGGGCATCAACCTGGACTTCAGCCTGACCTATGACGGCACGTTGCTGCCGGGCTGGC‑AGGTCACGCCCGGCGTCTTCTACTCGCGCTCGCTTGGCGGGCGAACGCCGAACCTGAGCGCCACCTTCACCGAAGACGCGAGCAGCATGAACCTGTACCTGAATTTCGTACGAAACCCGGCCAGTTGGCAGATTTCCCTCAACTACGCGAAGTTCATGGGCGGCGAAACCCCCTACGACCAGCTTTATCGTGACCGC  >  NC_002947/3206021‑3206307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.