| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3443566 = | 9 (0.180) | 3 (0.060) | 3/246 | NT | 19.0% | coding (2325/3270 nt) | PP_3062 | tail length determination protein |
| ? | NC_002947 | 3443605 = | 17 (0.350) | coding (2364/3270 nt) | PP_3062 | tail length determination protein | |||||
GGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGC > NC_002947/3443458‑3443710 | tcgcgcggatcatacgacactgccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCAc > 2:7756‑M1/109‑149 (MQ=255) tgCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTg > 8:45552/1‑149 (MQ=255) ccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCg < 1:24429‑M1/52‑1 (MQ=255) ccggatcagccttgaccggagccgtggcgggctcaggctcgacttccttggctggcatcaccgttacgcgtaacgctttacccagtGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCg > 2:24429‑M1/87‑138 (MQ=255) gTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGGTTGGTGACGAGCCGGCCGACGATAAAGCCGAGCCGGAATAGCCGCCGGCACTGGGTAAAGCGTTACCCGTAACGGTGATggcagc > 2:292302/1‑149 (MQ=255) ggtggCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGcc > 2:64068/1‑149 (MQ=255) ccccccggCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAg < 4:269549/143‑1 (MQ=255) cAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAg > 1:34676/1‑149 (MQ=255) aaGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAgt < 7:45552/149‑1 (MQ=255) aTGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGt < 1:292302/149‑1 (MQ=255) aTGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGt < 2:34676/149‑1 (MQ=255) tGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCcgc > 3:243295/1‑149 (MQ=255) gACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCcgcg > 1:277985/1‑149 (MQ=255) aCGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCcgcgc > 6:167913/1‑149 (MQ=255) | GGTGCCGGTGATCGGTACCGCTGTGGGTGGCGCGGTCGGCGCTGTCCTTGGTGGCATGGGGGGCGAGTCGTTTGGGGGGTGGCTGGGCAAGCGATGGTTTGGTGACGAGCCGGCCGACGATCAAGCCGAGCCGGAATCGCCGCCGGCACTGGGTAAAGCGTTACGCGTAACGGTGATGCCAGCCAAGGAAGTCGAGCCTGAGCCCGCCACGGCTCCGGTCAAGGCTGATCCGGCAGTGTCGTATGATCCGCGC > NC_002947/3443458‑3443710 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |