New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3528136 =	39 (0.770)	3 (0.060)	3/244	NT	7.2%	coding (1347/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	3528177 =	40 (0.840)					coding (1388/1419 nt)	imuB	DNA repair DNA linked protein

CGGGCAGCCGCCCGGGGTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGA  >  NC_002947/3527988‑3528281                                                                                                                                                     |                                                                                                                                                  tgccaaggcctggtagccctgctcgcgcgcacgccggaacagctcgtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacc                                                                                                                                                   <  5:264107‑M1/1‑1 (MQ=255)  gccaaggcctggtagccctgctcgcgcgcacgccggaacagctcgtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCg                                                                                                                                                  <  2:164162‑M1/2‑1 (MQ=255)   ccaaggcctggtagccctgctcgcgcgcacgccggaacagctcgtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCg                                                                                                                                                  >  4:214321‑M1/147‑148 (MQ=255)    caaggcctggtagccctgctcgcgcgcacgncggaacagctcgtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCGGc                                                                                                                                                <  1:26271‑M1/4‑1 (MQ=255)     aaggcctggtagccctgctcgcgcgcacgccggaacagctcgtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCGGcc                                                                                                                                               <  7:141082‑M1/5‑1 (MQ=255)       ggcctggtagccctgctcgcgcgcacgccggaacagctcgtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCGGCCTg                                                                                                                                             >  5:310239‑M1/143‑149 (MQ=255)                 gTGGCTGTTGTCGGCACCGATCGCGCTGGATGTCGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTggg                                                                                                                                   <  7:180496/149‑1 (MQ=255)                 gTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTggg                                                                                                                                   <  4:141416/149‑1 (MQ=255)                    gCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGcc                                                                                                                                 >  4:187363/1‑148 (MQ=255)                      tgttgtCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTAc                                                                                                                              >  5:278955/1‑149 (MQ=255)                        ttgtCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACcg                                                                                                                            <  7:14184/149‑1 (MQ=255)                             ggCACCGATCGCGCTGGATGACGCCGCATACGAGTTGCAGTGCTATGCCGAAAGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGAcc                                                                                                                       <  7:131277/149‑1 (MQ=255)                              gCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCt                                                                                                                      <  3:162585/149‑1 (MQ=255)                                aCCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCt                                                                                                                      >  3:181323/1‑147 (MQ=255)                                aCCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGa                                                                                                                    <  6:321650/149‑1 (MQ=255)                                     tCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAg                                                                                                               <  6:278955/149‑1 (MQ=255)                                        cgcTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGAcc                                                                                                                       <  8:29861/138‑1 (MQ=255)                                        cgcTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGAcc                                                                                                                       >  7:29861/1‑138 (MQ=255)                                             gATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGt                                                                                                         <  3:187363/147‑1 (MQ=255)                                              gtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTc                                                                                                        >  6:264107‑M1/104‑147 (MQ=255)                                                   gccgccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACAGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTg                                                                                                 >  8:141082/1‑149 (MQ=255)                                                                     ggCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCg                                                                                >  4:269315/1‑148 (MQ=255)                                                                       cTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTc                                                                                 <  3:221900/145‑1 (MQ=255)                                                                       cTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTc                                                                                 >  4:221900/1‑145 (MQ=255)                                                                             cGAACGCATCGAATCAGGGTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAacac                                                                       >  6:140779/1‑149 (MQ=255)                                                                                  ggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCg                                                                                                           <  2:245172‑M1/41‑1 (MQ=255)                                                                                  ggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCg                                                                                                           >  1:245172‑M1/68‑108 (MQ=255)                                                                                     tCGAATCAGGGTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGt                                                                >  8:204186/1‑148 (MQ=255)                                                                                       gAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTa                                                              <  1:194894/148‑1 (MQ=255)                                                                                       gAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTAt                                                             <  7:303210/149‑1 (MQ=255)                                                                                            aGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGa                                                        <  4:181323/149‑1 (MQ=255)                                                                                               ttGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCt                                                     >  3:134929/1‑149 (MQ=255)                                                                                                          gcggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCttt                                          <  3:269315/149‑1 (MQ=255)                                                                                                            ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCggg                                                                 <  2:320316/124‑1 (MQ=255)                                                                                                            ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCggg                                                                 >  1:320316/1‑124 (MQ=255)                                                                                                            ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                         >  4:96699/1‑148 (MQ=255)                                                                                                                 tgtgCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCATGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACtt                                   <  5:231778/149‑1 (MQ=255)                                                                                                                   tgCGGCGCGACTACTACCGCATCGAAACCCGTGCCGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGGTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCCACTTCa                                 <  6:98458/149‑1 (MQ=255)                                                                                                                           gACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAg                         >  8:53703/1‑149 (MQ=255)                                                                                                                                ctacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGcgcg                     <  3:96699/148‑1 (MQ=255)                                                                                                                                 tacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGt                   >  5:217492/1‑149 (MQ=255)                                                                                                                                     gCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                         >  4:17892/1‑123 (MQ=255)                                                                                                                                     gCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                         <  3:17892/123‑1 (MQ=255)                                                                                                                                     gCATCGAAACCCGTGACGGCCTGCCCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGt               >  1:164162/1‑149 (MQ=255)                                                                                                                                      cATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTc              >  6:149898/1‑149 (MQ=255)                                                                                                                                      cATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTc              >  6:12161/1‑149 (MQ=255)                                                                                                                                           aaaCCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAgcg         >  6:109559/1‑149 (MQ=255)                                                                                                                                              cccGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCcg      <  5:12161/149‑1 (MQ=255)                                                                                                                                                  tGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCcgacga  <  7:204186/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CGGGCAGCCGCCCGGGGTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGA  >  NC_002947/3527988‑3528281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.