New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3528136 =	39 (0.770)	3 (0.060)	3/244	NT	7.2%	coding (1347/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	3528177 =	40 (0.840)					coding (1388/1419 nt)	imuB	DNA repair DNA linked protein

GATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGCCTTGGCA  >  NC_002947/3528032‑3528324                                                                                                                                                  |                                                                                                                                                    gATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGt                                                                                                                                                    <  3:187363/147‑1 (MQ=255)  gtcggcgctcgacgcaccgcgctggaagctgaagttggaaaggcaatgcagctcggcataacccggggtgttcatgcgaaccaaccctgcagccaaagcggacCGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTc                                                                                                                                                   >  6:264107‑M1/104‑147 (MQ=255)       gccgccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACAGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTg                                                                                                                                            >  8:141082/1‑149 (MQ=255)                         ggCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCg                                                                                                                           >  4:269315/1‑148 (MQ=255)                           cTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTc                                                                                                                            >  4:221900/1‑145 (MQ=255)                           cTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTc                                                                                                                            <  3:221900/145‑1 (MQ=255)                                 cGAACGCATCGAATCAGGGTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAacac                                                                                                                  >  6:140779/1‑149 (MQ=255)                                         tCGAATCAGGGTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGt                                                                                                           >  8:204186/1‑148 (MQ=255)                                           gAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTa                                                                                                         <  1:194894/148‑1 (MQ=255)                                           gAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTAt                                                                                                        <  7:303210/149‑1 (MQ=255)                                                aGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGa                                                                                                   <  4:181323/149‑1 (MQ=255)                                                   ttGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCt                                                                                                >  3:134929/1‑149 (MQ=255)                                                              gcggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCttt                                                                                     <  3:269315/149‑1 (MQ=255)                                                                ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCggg                                                                                                            >  1:320316/1‑124 (MQ=255)                                                                ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCggg                                                                                                            <  2:320316/124‑1 (MQ=255)                                                                ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                                                                    >  4:96699/1‑148 (MQ=255)                                                                     tgtgCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCATGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACtt                                                                              <  5:231778/149‑1 (MQ=255)                                                                       tgCGGCGCGACTACTACCGCATCGAAACCCGTGCCGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGGTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCCACTTCa                                                                            <  6:98458/149‑1 (MQ=255)                                                                               gACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAg                                                                    >  8:53703/1‑149 (MQ=255)                                                                                    ctacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGcgcg                                                                <  3:96699/148‑1 (MQ=255)                                                                                     tacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGt                                                              >  5:217492/1‑149 (MQ=255)                                                                                         gCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                                                                    >  4:17892/1‑123 (MQ=255)                                                                                         gCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                                                                    <  3:17892/123‑1 (MQ=255)                                                                                         gCATCGAAACCCGTGACGGCCTGCCCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGt                                                          >  1:164162/1‑149 (MQ=255)                                                                                          cATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTc                                                         >  6:149898/1‑149 (MQ=255)                                                                                          cATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTc                                                         >  6:12161/1‑149 (MQ=255)                                                                                               aaaCCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAgcg                                                    >  6:109559/1‑149 (MQ=255)                                                                                                  cccGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCcg                                                 <  5:12161/149‑1 (MQ=255)                                                                                                      tGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCcgacga                                             <  7:204186/149‑1 (MQ=255)                                                                                                      gaccggcctggctcaggtcgcggtaggcccagccgcgcaggccgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCcgac                                               >  6:264107‑M2/45‑147 (MQ=255)                                                                                                         cggcctggctcaggtcgcggtaggcccagccgcgcaggccgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTcc                                                                                   <  2:245172‑M2/67‑1 (MQ=255)                                                                                                         cggcctggctcaggtcgcggtaggcccagccgcgcaggccgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTcc                                                                                   >  1:245172‑M2/42‑108 (MQ=255)                                                                                                                 gcgGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGc                                  <  2:90352/149‑1 (MQ=255)                                                                                                                 gcgGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGc                                  <  5:109559/149‑1 (MQ=255)                                                                                                                         gCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTgcgcgc                          <  5:140779/149‑1 (MQ=255)                                                                                                                         gCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTgcgcgc                          >  7:24513/1‑149 (MQ=255)                                                                                                                          ccTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTgcgcgc                          >  2:26271/1‑148 (MQ=255)                                                                                                                           cTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTgcgcgc                          >  3:182261/1‑147 (MQ=255)                                                                                                                           cTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTACAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTgcgcgc                          >  4:13867/1‑147 (MQ=255)                                                                                                                              ccGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAg                                                                    >  3:260608/1‑102 (MQ=255)                                                                                                                              ccGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAg                                                                    <  4:260608/102‑1 (MQ=255)                                                                                                                              ccGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCg                                                        >  8:295760/1‑114 (MQ=255)                                                                                                                              ccGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCg                                                        <  7:295760/114‑1 (MQ=255)                                                                                                                                     cTGAGCCAGGCCTGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                                                                    <  5:75175/79‑1 (MQ=255)                                                                                                                                     cTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTc                                                                                    >  6:75175/1‑79 (MQ=255)                                                                                                                                       gAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTAc              >  5:11210/1‑147 (MQ=255)                                                                                                                                       caGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCAtt                                                                                           >  3:118165/2‑70 (MQ=255)                                                                                                                                       caGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCAtt                                                                                           <  4:118165/69‑1 (MQ=255)                                                                                                                                          ccAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGc         >  6:247692/1‑149 (MQ=255)                                                                                                                                           caggccgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGcc        >  5:310239‑M2/8‑149 (MQ=255)                                                                                                                                             ggccgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGCCtt      <  7:141082‑M2/144‑1 (MQ=255)                                                                                                                                              gccgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGNCGTGCGCGCGAGCAGGGCTACCAGGCCTTg     <  1:26271‑M2/145‑1 (MQ=255)                                                                                                                                                cgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGCCTTgg    >  4:214321‑M2/3‑148 (MQ=255)                                                                                                                                                cgGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGCCTTGGc   <  2:164162‑M2/147‑1 (MQ=255)                                                                                                                                                 gGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGCCTTGGCa  <  5:264107‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    GATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTACCAGGCCTTGGCA  >  NC_002947/3528032‑3528324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.