New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3794274 =	36 (0.710)	3 (0.060)	3/246	NT	8.4%	coding (249/1191 nt)	PP_3355	beta‑ketothiolase
	?	NC_002947	3794323 =	31 (0.650)					coding (200/1191 nt)	PP_3355	beta‑ketothiolase

GAACCCGACCGGCGCCCCCAGGCGAAAACCGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCATGCTGCCGGCGAGCACACTGTCTACCGCCTGAGGGGCGGC  >  NC_002947/3794127‑3794420                                                                                                                                                     |                                                                                                                                                   ccatcgacctgggcattcaggccggccgcgcggtgctggcacgtgcagctgccgcccctcaggcggtagacagtgtgctcgccggcagcatggctcaggccagcttcgacgcctacatgctgccacgccatgtcggcctctactgtggc                                                                                                                                                    <  4:220136‑M1/1‑1 (MQ=255)   aCCCGACCGGCGCCACCAGGCGAAAACCGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTg                                                                                                                                                 <  8:227933/149‑1 (MQ=255)    tcgacctgggcattcaggccggccgcgcggtgctggcacgtgcagctgccgcccctcaggcggtagacagtgtgctcgccggcagcatggctcaggccagcttcgacgcctacatgctgccacgccatgtcggcctctactgtggCGTg                                                                                                                                                 >  8:203939‑M1/146‑149 (MQ=255)     ccGACCGGCGCCCCCAGGCGAAAACCGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGcc                                                                                                                                               >  3:220136/1‑149 (MQ=255)      gacctgggcattcaggccggccgcgcggtgctggcacgtgcagctgccgcccctcaggcggtagacagtgtgctcgccggcagcatggctcaggccagcttcgacgcctacatgctgccacgccatgtcggcctctactgtggCGTGcc                                                                                                                                               >  2:314885‑M1/144‑149 (MQ=255)          cGGCGCCCCCAGGCGAAAACCGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCACCCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAg                                                                                                                                           <  1:210074/149‑1 (MQ=255)          cGGCGCCCCCAGGCGAAAACCGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCca                                                                                                                                              >  3:279166/1‑145 (MQ=255)                ccccAGGCGAAAACCGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCt                                                                                                                                    >  3:250400/1‑149 (MQ=255)                              cGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGcc                                                                                                                      >  7:115073/1‑149 (MQ=255)                               gCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCg                                                                                                                     <  3:125163/149‑1 (MQ=255)                                           aTAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCATTGCCGGTACCGCCTGCg                                                                                                         >  2:46080/1‑149 (MQ=255)                                           aTAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCg                                                                                                         <  2:242381/149‑1 (MQ=255)                                              cagctgccgcccctcaggcggtagacagtgtgctcgccggcagcatggctcaggccagcttcgacgcctacatgctgccacgccatgtcggcctctactgtggCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCgg                                                                                                        >  5:283083‑M1/104‑148 (MQ=255)                                               gCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCAc                                                                                                     >  4:45133/1‑149 (MQ=255)                                                    ccgcccctcaggcggtagacagtgtgctcgccggcagcatggctcaggccagcttcgacgcctacatgctgccacgccatgtcggcctctactgtggCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCAc                                                                                                     >  6:202035‑M1/98‑145 (MQ=255)                                                    ccgcccctcaggcggtagacagtgtgctcgccggcagcatggctcaggccagcttcgacgcctacatgctgccacgccatgtcggcctctactgtggCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCAc                                                                                                     <  5:202035‑M1/48‑1 (MQ=255)                                                     aTCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCcaca                                                                                               <  4:250400/149‑1 (MQ=255)                                                      tCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAg                                                                                              >  5:112498/1‑149 (MQ=255)                                                        ggATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGt                                                                                             <  1:296524/148‑1 (MQ=255)                                                        ggATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGt                                                                                             <  8:115073/148‑1 (MQ=255)                                                        ggATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTa                                                                                            <  4:279166/149‑1 (MQ=255)                                                              cgcgACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCAcc                                                                                                                               >  4:174123/1‑108 (MQ=255)                                                              cgcgACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCAcc                                                                                                                               <  3:174123/108‑1 (MQ=255)                                                                cgACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGa                                                                                    <  8:273579/149‑1 (MQ=255)                                                                     tCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATgg                                                                               >  2:30999/1‑149 (MQ=255)                                                                       gACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCg                                                                             >  8:155773/1‑149 (MQ=255)                                                                          tCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTgg                                                                          >  4:212336/1‑149 (MQ=255)                                                                           ccGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTgg                                                                          >  5:329049/1‑148 (MQ=255)                                                                            cgcgCTCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTgg                                                                          <  4:110266/147‑1 (MQ=255)                                                                            cgcgCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGgca                                                                        <  3:45133/149‑1 (MQ=255)                                                                             gcgcCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGgcag                                                                       <  6:112498/149‑1 (MQ=255)                                                                               gcCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGgc                                                                         <  5:271516/145‑1 (MQ=255)                                                                               gcCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGgc                                                                         >  6:271516/1‑145 (MQ=255)                                                                                         aGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTc                                                           >  6:295345/1‑149 (MQ=255)                                                                                             ccTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAg                                                       <  6:11029/149‑1 (MQ=255)                                                                                                ggcgggcgCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTg                                                    >  4:309041/1‑149 (MQ=255)                                                                                                 gcgggcgCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACCGTTCAAGGCCCGTGCCACAGAAGCGCTGCCCCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGCAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTgg                                                   <  7:53707/149‑1 (MQ=255)                                                                                                               gcAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCAtgctg                                     >  2:65759/1‑149 (MQ=255)                                                                                                                         a‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGgcagc                                                                      >  2:148632/1‑106 (MQ=255)                                                                                                                         a‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGgcagc                                                                      <  1:148632/106‑1 (MQ=255)                                                                                                                            cGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCATGCTGCCGGCGAGcaca                         <  5:163662/149‑1 (MQ=255)                                                                                                                                              cAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCATGCTGCCGGCGAGCACACTGTCTACCGCCTGAg         <  3:269444/147‑1 (MQ=255)                                                                                                                                              cAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCATGCTGCCGGCGAGCACACTGTCTACCGCCTGAg         >  4:269444/1‑147 (MQ=255)                                                                                                                                                aGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCATGCTGCCGGCGAGCACACTGTCTACCGCCTGAGGggc     <  1:46080/149‑1 (MQ=255)                                                                                                                                                   cccGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCATGCTGCCGGCGAGCACACTGTCTACCGCCTGAGGggcggc  <  3:309041/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GAACCCGACCGGCGCCCCCAGGCGAAAACCGCCCCGGTGTTCATAGGCCGCGATCGGATTGCGCGACATCGACTCCGCGCCCACGCACAGCACCTGGCGGGCGCCACTGCGCAGCTGTTCA‑CCGGCCTGACGCAACAGTTCAAGGCCCGTGCCACAGATGCGCTGCACCGCCAGTGCCGGTACCGCCTGCGGCACGCCACAGTAGAGGCCGACATGGCGTGGCAGCATGTAGGCGTCGAAGCTGGCCTGAGCCATGCTGCCGGCGAGCACACTGTCTACCGCCTGAGGGGCGGC  >  NC_002947/3794127‑3794420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.