| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3849459 = | 51 (1.010) | 3 (0.060) | 3/250 | NT | 6.2% | coding (1224/2268 nt) | PP_3397 | hypothetical protein |
| ? | NC_002947 | 3849493 = | 42 (0.860) | coding (1258/2268 nt) | PP_3397 | hypothetical protein | |||||
TCACCGCCAGCAACGCAGTCGGCGGCACCCAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCA > NC_002947/3849311‑3849607 | tCACCGCCAGCAACGCAGTCGGCGGCACCCAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTcccc > 2:19108/1‑149 (MQ=255)gcggtggctggttggcggcctcgaccggggcgctgccgaccacgatcaccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttc > 4:183132‑M1/149‑149 (MQ=255)gcggtggctggttggcggcctcgaccggggcgctgccgaccacgatcaccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttc > 5:270930‑M1/149‑149 (MQ=255) cGCCAGCAACGCAGTCGGCGGCACCCAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAATCGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGAcc < 1:75614/149‑1 (MQ=255) cGCCAGCAACGCAGTCGGCGGCACCCAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGAcc > 4:158501/1‑149 (MQ=255) aaCGCAGTCGGCGGCACCCAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGc < 7:167786/149‑1 (MQ=255) gTCGGCGGCACCCAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAgg < 5:293153/149‑1 (MQ=255) ccAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCg < 8:230199/131‑1 (MQ=255) ccAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCg > 7:230199/1‑131 (MQ=255) aGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGc > 4:180081/1‑146 (MQ=255) aGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGc < 3:180081/146‑1 (MQ=255) ccGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAgg < 6:200549/134‑1 (MQ=255) ccGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAgg > 5:200549/1‑134 (MQ=255) cGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCg < 2:278515/149‑1 (MQ=255) cgatcaccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGc > 6:328328‑M1/107‑149 (MQ=255) ccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGaaa < 7:29094‑M1/37‑1 (MQ=255) ccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGaaa > 8:29094‑M1/101‑137 (MQ=255) aCTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGc < 7:120073/146‑1 (MQ=255) aCTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGc > 8:120073/1‑146 (MQ=255) aCTCAGCGACGTGGTCAAAGTCAGCACCACACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTc < 6:260351/129‑1 (MQ=255) aCTCAGCGACGTGGTCAAAGTCAGCACCACACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTc > 5:260351/1‑129 (MQ=255) tCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGc < 4:244821/119‑1 (MQ=255) tCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGc > 3:244821/1‑119 (MQ=255) aGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCaaa < 1:138123/145‑1 (MQ=255) aGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCaaa > 2:138123/1‑145 (MQ=255) aGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCAt > 1:134566/1‑149 (MQ=255) gTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCaa > 1:73139/1‑149 (MQ=255) gTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCACAAGGCTACGGCAGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCa > 4:18739/1‑148 (MQ=255) tCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAAc > 7:4172/1‑149 (MQ=255) gTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGAttt < 6:168973/149‑1 (MQ=255) tCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTg > 4:304200/1‑149 (MQ=255) cGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAccgcc < 3:304200/149‑1 (MQ=255) gCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTgg > 4:213708/1‑138 (MQ=255) gCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTgg < 3:213708/138‑1 (MQ=255) cTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAccgcccg < 8:4172/149‑1 (MQ=255) tATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGAGGTCCCCGACCTGCTCGACCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAccgcccg > 5:88890/1‑148 (MQ=255) ggCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCa < 7:156650/113‑1 (MQ=255) ggCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCa > 8:156650/1‑113 (MQ=255) caacaaACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACTGCCGCATGTCGAAATCGTGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACgg < 3:18739/149‑1 (MQ=255) gTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCt > 5:309340/1‑149 (MQ=255) cTGTTGAGCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGc < 4:235661/149‑1 (MQ=255) gTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGcc > 2:195777/1‑148 (MQ=255) ttGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCa > 6:245638/1‑149 (MQ=255) tCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGc > 5:142132/1‑149 (MQ=255) gAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGa > 2:234358/1‑101 (MQ=255) gAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGa < 1:234358/101‑1 (MQ=255) aGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGt < 6:309340/149‑1 (MQ=255) cAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTg < 5:245638/149‑1 (MQ=255) tCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCACCGATTTGGCTCAACCGCCCGCTACCGGTACGGTCAAGTCTGCCCATGGCGGTAGTGAtgg > 4:182098/1‑148 (MQ=255) cAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGAtgtg < 1:195777/148‑1 (MQ=255) cgacgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGc < 2:134566/149‑1 (MQ=255) acgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCg < 3:158501/149‑1 (MQ=255) cgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCgg < 1:19108/149‑1 (MQ=255) gaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGt < 2:73139/149‑1 (MQ=255) aGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCg > 4:44154/1‑149 (MQ=255) cGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTg < 6:203582/149‑1 (MQ=255) ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGTTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTgg < 3:148667/134‑1 (MQ=255) ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGTTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTgg > 4:148667/1‑134 (MQ=255) ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTgg < 6:142132/149‑1 (MQ=255) CGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCa > 2:108978‑M1/1‑149 (MQ=255) | TCACCGCCAGCAACGCAGTCGGCGGCACCCAGCCGACTGCGCTCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCA > NC_002947/3849311‑3849607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |