New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3849459 =	51 (1.010)	3 (0.060)	3/250	NT	6.2%	coding (1224/2268 nt)	PP_3397	hypothetical protein
	?	NC_002947	3849493 =	42 (0.860)					coding (1258/2268 nt)	PP_3397	hypothetical protein

TCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCT  >  NC_002947/3849353‑3849641                                                                                                                                             |                                                                                                                                                     cgatcaccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGc                                                                                                                                              >  6:328328‑M1/107‑149 (MQ=255)       ccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGaaa                                                                                                                                                    >  8:29094‑M1/101‑137 (MQ=255)       ccggctccacatcactaccgccatgggcagacttgaccgtaacggtagcgggcggttgagccaaatcgttgaccgtgatgctttgcagcgtgcccgatttCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGaaa                                                                                                                                                    <  7:29094‑M1/37‑1 (MQ=255)           aCTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGc                                                                                                                                       >  8:120073/1‑146 (MQ=255)           aCTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGc                                                                                                                                       <  7:120073/146‑1 (MQ=255)               aGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCaaa                                                                                                                                    <  1:138123/145‑1 (MQ=255)               aGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCaaa                                                                                                                                    >  2:138123/1‑145 (MQ=255)               aGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCAt                                                                                                                                >  1:134566/1‑149 (MQ=255)                        gTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCaa                                                                                                                       >  1:73139/1‑149 (MQ=255)                        gTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCACAAGGCTACGGCAGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCa                                                                                                                        >  4:18739/1‑148 (MQ=255)                         tCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAAc                                                                                                                      >  7:4172/1‑149 (MQ=255)                              gTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGAttt                                                                                                                 <  6:168973/149‑1 (MQ=255)                               tCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTg                                                                                                                >  4:304200/1‑149 (MQ=255)                                          cGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAccgcc                                                                                                     <  3:304200/149‑1 (MQ=255)                                           gCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTgg                                                                                                               >  4:213708/1‑138 (MQ=255)                                           gCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTgg                                                                                                               <  3:213708/138‑1 (MQ=255)                                            cTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAccgcccg                                                                                                   <  8:4172/149‑1 (MQ=255)                                             tATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGAGGTCCCCGACCTGCTCGACCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAAccgcccg                                                                                                   >  5:88890/1‑148 (MQ=255)                                                     ggCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCa                                                                                                                              >  8:156650/1‑113 (MQ=255)                                                     ggCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCa                                                                                                                              <  7:156650/113‑1 (MQ=255)                                                        caacaaACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACTGCCGCATGTCGAAATCGTGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACgg                                                                                       <  3:18739/149‑1 (MQ=255)                                                                gTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCt                                                                               >  5:309340/1‑149 (MQ=255)                                                                  cTGTTGAGCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGc                                                                             <  4:235661/149‑1 (MQ=255)                                                                    gTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGcc                                                                            >  2:195777/1‑148 (MQ=255)                                                                     ttGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCa                                                                          >  6:245638/1‑149 (MQ=255)                                                                         tCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGc                                                                      >  5:142132/1‑149 (MQ=255)                                                                           gAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGa                                                                                                                    <  1:234358/101‑1 (MQ=255)                                                                           gAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGa                                                                                                                    >  2:234358/1‑101 (MQ=255)                                                                            aGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGt                                                                   <  6:309340/149‑1 (MQ=255)                                                                                cAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTg                                                               <  5:245638/149‑1 (MQ=255)                                                                                    tCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCACCGATTTGGCTCAACCGCCCGCTACCGGTACGGTCAAGTCTGCCCATGGCGGTAGTGAtgg                                                           >  4:182098/1‑148 (MQ=255)                                                                                      cAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGAtgtg                                                          <  1:195777/148‑1 (MQ=255)                                                                                         cgacgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGc                                                      <  2:134566/149‑1 (MQ=255)                                                                                           acgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCg                                                    <  3:158501/149‑1 (MQ=255)                                                                                            cgaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCgg                                                   <  1:19108/149‑1 (MQ=255)                                                                                             gaAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGt                                                  <  2:73139/149‑1 (MQ=255)                                                                                                  gcccgatttcgacatgcggccgtagccttgggcgagcaggtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCg                                             >  6:328328‑M2/44‑149 (MQ=255)                                                                                                  aGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCg                                             >  4:44154/1‑149 (MQ=255)                                                                                                    cGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTg                                           <  6:203582/149‑1 (MQ=255)                                                                                                     ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGTTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTgg                                                         <  3:148667/134‑1 (MQ=255)                                                                                                     ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGTTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTgg                                                         >  4:148667/1‑134 (MQ=255)                                                                                                     ggTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTgg                                          <  6:142132/149‑1 (MQ=255)                                                                                                        tttcgacatgcggccgtagccttgggcgagcaggtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCgg                                                   <  7:29094‑M2/100‑1 (MQ=255)                                                                                                        tttcgacatgcggccgtagccttgggcgagcaggtcgAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCgg                                                   >  8:29094‑M2/38‑137 (MQ=255)                                                                                                           CGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCa                                    >  2:108978‑M1/1‑149 (MQ=255)                                                                                                                  cTCGCCCAAGGCTACGGCCGCATGTCGAAATCTGGCACGCTGCAAAGCATCACGCTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGcccc                             >  5:183481/1‑149 (MQ=255)                                                                                                                      cccAAGGCTACGGCCGCATGTCGAACTCGGGCACGCTGCAAAGCATCACGGGCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGGCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTc                         <  3:182098/149‑1 (MQ=255)                                                                                                                       ccAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTc                         >  1:256399/1‑148 (MQ=255)                                                                                                                                   ccGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTg                                           <  3:232712/118‑1 (MQ=255)                                                                                                                                    cGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAgcg                                 >  7:117014/1‑127 (MQ=255)                                                                                                                                    cGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAgcg                                 <  8:117014/127‑1 (MQ=255)                                                                                                                                     gCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAg          >  5:114181/1‑149 (MQ=255)                                                                                                                                            gAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGc   >  5:270930‑M2/2‑149 (MQ=255)                                                                                                                                            gAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGc   >  4:183132‑M2/2‑149 (MQ=255)                                                                                                                                             aaaTCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCACGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTAATGTGGAGCCCGTGAACGTGGTCGGCAGCGCCCAGGTCTAGGCCGCAAACCATCCACCGCt  >  5:248673/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                     TCTCGAGCAAACTCAGCGACGTGGTCAAAGTCAGCACCGCACGCTATGACTGGGCCAACAAACGTCTGTTGATCGAGGCCAGCTCCAGCGACGAAGTAGCGGTCCCCGACCTGCTCGCCCAAGGCTACGGCCGCATGTCGAAATCGGGCACGCTGCAAAGCATCACGGTCAACGATTTGGCTCAACCGCCCGCTACCGTTACGGTCAAGTCTGCCCATGGCGGTAGTGATGTGGAGCCGGTGATCGTGGTCGGCAGCGCCCCGGTCGAGGCCGCCAACCAGCCACCGCT  >  NC_002947/3849353‑3849641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.