New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4701232 = | 51 (1.010) | 3 (0.060) | 3/244 | NT | 7.0% | coding (163/558 nt) | kdpC | potassium‑transporting ATPase subunit C |
? | NC_002947 | 4701290 = | 32 (0.670) | coding (105/558 nt) | kdpC | potassium‑transporting ATPase subunit C |
AACGTGGCCGCATCGCCCTTTACCCGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGC > NC_002947/4701084‑4701373 | gacctgctgctcaacgccctgaacctggtctgaggaggccgccatgactgcttatctacgcccggcattgagcctggctttgttgatgaccctggtgacgggcgccctgtatccgctggcggtgaccggtattgcccaagtcgctttcc < 7:275707‑M1/1‑1 (MQ=255) aaCGTGGCCGCATCGCCCTTTACCCGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGc < 7:97980/149‑1 (MQ=255) aaCGTGGCCGCATCGCCCTTTACCCGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGc < 7:182479/149‑1 (MQ=255) aaCGTGGCCGCATCGCCCTTTACCCGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGc > 2:179696/1‑149 (MQ=255) aCGTGGCCGCATCGCCCTTTACCCGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGcc > 1:124423/1‑149 (MQ=255) cTTTACCCGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGc > 5:251915/1‑149 (MQ=255) cccGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTgc < 2:11830/149‑1 (MQ=255) cccGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTgc < 4:170545/149‑1 (MQ=255) cGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTgcg > 1:107084/1‑148 (MQ=255) gCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCa > 7:98235/1‑149 (MQ=255) gCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCa > 3:96460/1‑149 (MQ=255) ccagcGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATcgcg > 4:99050/1‑148 (MQ=255) ttGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTAcc < 7:9017/149‑1 (MQ=255) cTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑Acccc < 4:200784/112‑1 (MQ=255) cTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑Acccc > 3:200784/1‑112 (MQ=255) tCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCTTCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTg < 8:214461/149‑1 (MQ=255) tCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTg > 2:157057/1‑149 (MQ=255) ggCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTgg < 7:159544/148‑1 (MQ=255) ggCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTg < 6:251915/147‑1 (MQ=255) gCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGcc < 1:8064/149‑1 (MQ=255) gACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTg < 8:98235/149‑1 (MQ=255) gACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTg < 3:17915/149‑1 (MQ=255) gTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCt < 6:25606/143‑1 (MQ=255) gTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCt > 5:25606/1‑143 (MQ=255) gTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCg < 3:99050/149‑1 (MQ=255) gcccggcattgagcctggctttgttgatgaccctggtgacgggcgccctgtatccgctggcggtgaccggtattgcccaagtcgctttcCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCggg > 3:85191‑M1/90‑148 (MQ=255) gcccggcattgagcctggctttgttgatgaccctggtgacgggcgccctgtatccgctggcggtgaccggtattgcccaagtcgctttcCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCggg < 4:85191‑M1/59‑1 (MQ=255) cTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGa > 3:61765/1‑148 (MQ=255) tGGCGCCGCTGGCCACGGTCGCGTAGGTACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGa > 1:165674/1‑147 (MQ=255) tGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGCACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGa > 5:147713/1‑147 (MQ=255) cgtcattgagcctggctttgttgatgaccctggtgacgggcgccctgtatccgctggcggtgaccggtattgcccaagtcgctttcCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAg > 8:214983‑M1/87‑149 (MQ=255) gCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACGGTTGGCCTGGTTCGGGAAAGCGACTTgg < 1:179696/147‑1 (MQ=255) gCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTggg > 4:218057/1‑148 (MQ=255) gCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTggg > 4:241070/1‑148 (MQ=255) ccACGGTCGCGTAGGCACCTGCCGACGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTGCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGGATCCCGTACCAGGCTACCGTTTGCCTGGTTCGGGAAAGCGAATTGGGc > 2:274703/1‑148 (MQ=255) cACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCa > 2:312729/1‑148 (MQ=255) tCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGTAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCg < 1:274703/149‑1 (MQ=255) tCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCg < 3:218057/149‑1 (MQ=255) aCCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAg > 6:20978/1‑96 (MQ=255) aCCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAg < 5:20978/96‑1 (MQ=255) aCCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCgg > 5:33917/1‑117 (MQ=255) aCCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCgg < 6:33917/117‑1 (MQ=255) aCCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGc > 2:310087/1‑147 (MQ=255) cTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCAcc < 4:200878/143‑1 (MQ=255) cTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCAcc > 3:200878/1‑143 (MQ=255) cTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGc > 8:275707/1‑149 (MQ=255) gCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGCCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAgg < 4:96460/149‑1 (MQ=255) tGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGt > 6:289973/1‑149 (MQ=255) aCCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATAc > 2:189896/1‑134 (MQ=255) aCCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATAc < 1:189896/134‑1 (MQ=255) aGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAgg < 2:107084/149‑1 (MQ=255) gCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAggg < 3:241070/149‑1 (MQ=255) cATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGtc < 2:165674/149‑1 (MQ=255) cATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGtc < 4:61765/149‑1 (MQ=255) ccTGGAAGTCCTGGGCGATCAATGCCGATACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATcaa > 1:182166/1‑149 (MQ=255) ccTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAgg > 5:199670/1‑149 (MQ=255) cTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGc < 6:199670/149‑1 (MQ=255) gggCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCt > 3:158592/1‑148 (MQ=255) aTCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGc > 2:281863/1‑149 (MQ=255) | AACGTGGCCGCATCGCCCTTTACCCGCTCAGCCAGCGCCGGGTTGCTCGGCGACAGGTTGCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGC > NC_002947/4701084‑4701373 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |