New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4701232 =	51 (1.010)	3 (0.060)	3/244	NT	7.0%	coding (163/558 nt)	kdpC	potassium‑transporting ATPase subunit C
	?	NC_002947	4701290 =	32 (0.670)					coding (105/558 nt)	kdpC	potassium‑transporting ATPase subunit C

GCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCCTCCTCAGACCAGGTTCAGGGCGTTGAGCAGCAGGTC  >  NC_002947/4701143‑4701437                                                                                                                                                     |                                                                                                                                                    gcccggcattgagcctggctttgttgatgaccctggtgacgggcgccctgtatccgctggcggtgaccggtattgcccaagtcgctttcCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCggg                                                                                                                                                     >  3:85191‑M1/90‑148 (MQ=255) gcccggcattgagcctggctttgttgatgaccctggtgacgggcgccctgtatccgctggcggtgaccggtattgcccaagtcgctttcCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCggg                                                                                                                                                     <  4:85191‑M1/59‑1 (MQ=255)  cTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGa                                                                                                                                                    >  3:61765/1‑148 (MQ=255)   tGGCGCCGCTGGCCACGGTCGCGTAGGTACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGa                                                                                                                                                    >  1:165674/1‑147 (MQ=255)   tGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGCACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGa                                                                                                                                                    >  5:147713/1‑147 (MQ=255)    cgtcattgagcctggctttgttgatgaccctggtgacgggcgccctgtatccgctggcggtgaccggtattgcccaagtcgctttcCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAg                                                                                                                                                 >  8:214983‑M1/87‑149 (MQ=255)              gCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACGGTTGGCCTGGTTCGGGAAAGCGACTTgg                                                                                                                                         <  1:179696/147‑1 (MQ=255)              gCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTggg                                                                                                                                        >  4:241070/1‑148 (MQ=255)              gCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTggg                                                                                                                                        >  4:218057/1‑148 (MQ=255)               ccACGGTCGCGTAGGCACCTGCCGACGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTGCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGGATCCCGTACCAGGCTACCGTTTGCCTGGTTCGGGAAAGCGAATTGGGc                                                                                                                                       >  2:274703/1‑148 (MQ=255)                cACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCa                                                                                                                                      >  2:312729/1‑148 (MQ=255)                     tCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGTAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCg                                                                                                                                <  1:274703/149‑1 (MQ=255)                     tCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCg                                                                                                                                <  3:218057/149‑1 (MQ=255)                               aCCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGc                                                                                                                        >  2:310087/1‑147 (MQ=255)                                 cTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCAcc                                                                                                                          >  3:200878/1‑143 (MQ=255)                                 cTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCAcc                                                                                                                          <  4:200878/143‑1 (MQ=255)                                 cTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGc                                                                                                                    >  8:275707/1‑149 (MQ=255)                                          gCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGCCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAgg                                                                                                           <  4:96460/149‑1 (MQ=255)                                                  tGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGt                                                                                                   >  6:289973/1‑149 (MQ=255)                                                      aCCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATAc                                                                                                              >  2:189896/1‑134 (MQ=255)                                                      aCCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATAc                                                                                                              <  1:189896/134‑1 (MQ=255)                                                         aGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAgg                                                                                            <  2:107084/149‑1 (MQ=255)                                                          gCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAggg                                                                                           <  3:241070/149‑1 (MQ=255)                                                            cATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGtc                                                                                         <  2:165674/149‑1 (MQ=255)                                                            cATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGtc                                                                                         <  4:61765/149‑1 (MQ=255)                                                                  ccTGGAAGTCCTGGGCGATCAATGCCGATACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATcaa                                                                                    >  1:182166/1‑149 (MQ=255)                                                                           ccTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAgg                                                                          >  5:199670/1‑149 (MQ=255)                                                                            cTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGc                                                                         <  6:199670/149‑1 (MQ=255)                                                                              gggCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCt                                                                        >  3:158592/1‑148 (MQ=255)                                                                                   aTCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGc                                                                  >  2:281863/1‑149 (MQ=255)                                                                                      ctttcccgaaccaggccaacggtagcctggtacgcgatgcgcaaggccaggtgcggggttcggGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGACg                                                                >  8:214983‑M2/64‑149 (MQ=255)                                                                                          cccgaaccaggccaacggtagcctggtacgcgatgcgcaaggccaggtgcggggttcggGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGc                                                             >  3:85191‑M2/60‑148 (MQ=255)                                                                                          cccgaaccaggccaacggtagcctggtacgcgatgcgcaaggccaggtgcggggttcggGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGc                                                             <  4:85191‑M2/89‑1 (MQ=255)                                                                                             A‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGa                                                        >  1:312729‑M1/1‑149 (MQ=255)                                                                                               ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGAt                                                       >  5:289973‑M1/1‑149 (MQ=255)                                                                                                 CCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGAt                                                       <  1:134851‑M1/147‑1 (MQ=255)                                                                                                 CCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATaa                                                     >  2:182166‑M1/1‑149 (MQ=255)                                                                                                            ccTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATggc                                          <  4:158592/149‑1 (MQ=255)                                                                                                                gcgcATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATggcggc                                       <  1:310087/148‑1 (MQ=255)                                                                                                                     tCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCatcctc                                 <  2:124423/149‑1 (MQ=255)                                                                                                                       gcgTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGcctcct                                  >  3:133022/1‑146 (MQ=255)                                                                                                                       gcgTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCCTCCTCa                                <  2:134851/148‑1 (MQ=255)                                                                                                                       gcgTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCCTCCTCAg                               <  1:157057/149‑1 (MQ=255)                                                                                                                           aCCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCCTCCTCAGAc                             >  7:293739/1‑147 (MQ=255)                                                                                                                                       ttGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCCTCCTCAGACCAGGTTCAGGGCGt               <  4:133022/149‑1 (MQ=255)                                                                                                                                            cTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAg                                                    <  4:139651/107‑1 (MQ=255)                                                                                                                                            cTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAg                                                    >  3:139651/1‑107 (MQ=255)                                                                                                                                                    gGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCCTCCTCAGACCAGGTTCAGGGCGTTGAGCAGCAGGTc  <  7:275707‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCTGGCGCCGCTGGCCACGGTCGCGTAGGCACCTGCCGAGGGCCGCGAGTGGAACCAGCCATCGCCCTGGAAGTCCTGGGCGATCAATGCCGA‑ACCCCGCACCTGGCCTTGCGCATCGCGTACCAGGCTACCGTTGGCCTGGTTCGGGAAAGCGACTTGGGCAATACCGGTCACCGCCAGCGGATACAGGGCGCCCGTCACCAGGGTCATCAACAAAGCCAGGCTCAATGCCGGGCGTAGATAAGCAGTCATGGCGGCCTCCTCAGACCAGGTTCAGGGCGTTGAGCAGCAGGTC  >  NC_002947/4701143‑4701437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.