New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5070409	47 (0.930)	3 (0.060)	3/246	NT	6.3%	coding (478/873 nt)	PP_4466	TauD/TfdA family dioxygenase
	?	NC_002947	= 5070436	44 (0.920)					coding (451/873 nt)	PP_4466	TauD/TfdA family dioxygenase

AGCTTGTCGACCACTGTCACCATGTACCCGAACGAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGGTG  >  NC_002947/5070266‑5070557                                                                                                                                                |                                                                                                                                                      agCTTGTCGACCACTGTCACCATGTACCCGAACGAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCttt                                                                                                                                                  >  8:30183/1‑149 (MQ=255)       tCGACCACTGTCACCATGTACCCGAACGAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTg                                                                                                                                            >  8:253111/1‑149 (MQ=255)               tGTCACCATGTACCCGAACGAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAg                                                                                                                                     >  6:260156/1‑148 (MQ=255)                 tCACCATGTACCCGAACGAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGt                                                                                                                                    <  5:137983/147‑1 (MQ=255)                 tCACCATGTACCCGAACGAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGt                                                                                                                                    <  3:155247/147‑1 (MQ=255)                                  gAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGt                                                                                                                                    >  5:216106/1‑130 (MQ=255)                                  gAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGt                                                                                                                                    <  6:216106/130‑1 (MQ=255)                                   aGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGtctc                                                                                                                <  1:301726/149‑1 (MQ=255)                                      ggATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGtcctatctactggacgcagtcaaaggccggcagatcttcttc                                                                                                             <  4:141071‑M1/149‑43 (MQ=255)                                            aCGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGa                                                                                                                                 <  5:74506/123‑1 (MQ=255)                                            aCGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGa                                                                                                                                 >  6:74506/1‑123 (MQ=255)                                            aCGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGt                                                                                                              >  7:285287/1‑142 (MQ=255)                                            aCGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGt                                                                                                              <  8:285287/142‑1 (MQ=255)                                              gATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCTTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGAt                                                                                                     <  7:30183/149‑1 (MQ=255)                                                   cTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATc                                                                                                <  6:10119/149‑1 (MQ=255)                                                    tGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCt                                                                                                                                                   >  6:281823/1‑97 (MQ=255)                                                    tGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCt                                                                                                                                                   <  5:281823/97‑1 (MQ=255)                                                         aCTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGtcctatctactggacgcagtcaaaggccggcaga                                                                                                                     <  3:73680‑M1/122‑35 (MQ=255)                                                         aCTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGtcctatctactggacgcagtcaaaggccggcaga                                                                                                                     >  4:73680‑M1/1‑88 (MQ=255)                                                         aCTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATAcc                                                                                          >  2:266324/1‑149 (MQ=255)                                                             aCGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCaa                                                                                       >  2:73126/1‑148 (MQ=255)                                                              cGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGGAGTCCTCTCGCCGCGTCATACAAGCTGTGGAAGAAGATCTGTCTGCATTTGACTGCGTCCATTATATATGAGGGCATGGTCTCTTAAGCCTGATATATCGATATCCAATa                                                                                     <  6:322482/149‑1 (MQ=255)                                                                  tGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCttt                                                                                                                                                 >  3:214944/1‑85 (MQ=255)                                                                  tGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCttt                                                                                                                                                 <  4:214944/85‑1 (MQ=255)                                                                         ggACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTcacca                                                                           <  1:73126/148‑1 (MQ=255)                                                                               aGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGt                                                                      <  7:253111/147‑1 (MQ=255)                                                                                   aCCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCgg                                                               <  5:260156/149‑1 (MQ=255)                                                                                     cTGCTTGTTCAGTCGCAGACCTCCCGCCGCATCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCgg                                                               >  1:181598/1‑147 (MQ=255)                                                                                      tGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAg                                                            >  1:315951/1‑149 (MQ=255)                                                                                        cTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGt                                                           <  3:166715/148‑1 (MQ=255)                                                                                                gTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAg                                                  >  1:188258/1‑149 (MQ=255)                                                                                                     aGACGTCCCGGCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCgcag                                             <  2:221151/149‑1 (MQ=255)                                                                                                         cTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGa                                                   >  2:275684/1‑139 (MQ=255)                                                                                                         cTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGt                                         >  8:208283/1‑149 (MQ=255)                                                                                                           cccGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACAt                                                                                                 >  5:294707/1‑92 (MQ=255)                                                                                                           cccGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACAt                                                                                                 <  6:294707/92‑1 (MQ=255)                                                                                                            ccgccgCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCt                                      >  8:11222/1‑149 (MQ=255)                                                                                                                cgcgTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAg                                  <  7:208283/149‑1 (MQ=255)                                                                                                                      aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATa                                                                                     >  5:162211/1‑93 (MQ=255)                                                                                                                      aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATa                                                                                     <  6:162211/93‑1 (MQ=255)                                                                                                                      aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGGTGCGGAAGTGCAATGGAGCGCAGCAGTGCTCCa                                   <  1:34895/143‑1 (MQ=255)                                                                                                                      aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCa                                   >  2:34895/1‑142 (MQ=255)                                                                                                                      aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggtg                            <  1:266324/149‑1 (MQ=255)                                                                                                                      aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggtg                            >  8:270407/1‑149 (MQ=255)                                                                                                                      aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggt                             <  2:181598/148‑1 (MQ=255)                                                                                                                       tACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggtg                            >  6:306690/1‑148 (MQ=255)                                                                                                                        acacGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGAGACATCGATACCCAATAGGTGTCACCACCAGGGG‑GCGGAAGTGCACTGGAGCGCAGCAGTGCTCCCGCTGGTGGa                          >  6:51576/1‑149 (MQ=255)                                                                                                                           cGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGc                                       <  3:280189/133‑1 (MQ=255)                                                                                                                           cGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGc                                       >  4:280189/1‑133 (MQ=255)                                                                                                                                 ggAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGAGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCg                    >  1:76879/1‑146 (MQ=255)                                                                                                                                  gaagaaGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGAcggcagatcttcttccagagcgtgtatgacgcggcgggaggtctgcgactgaacaagcaggtgcctaagtccgatgacatccgtgagtggccagggatcgtgcatcc                 <  4:141071‑M2/149‑108 (MQ=255)                                                                                                                                   aagaagATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGaa               >  5:99970/1‑149 (MQ=255)                                                                                                                                        gaTCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTc                     <  7:268395/138‑1 (MQ=255)                                                                                                                                        gaTCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTc                     >  8:268395/1‑138 (MQ=255)                                                                                                                                          tCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGAcggcagatcttcttccagagcgtgtatgacgcggcgggaggtctgcgactgaacaagcaggtgcctaagtccgatgacatccgtgagt                                    >  4:73680‑M2/1‑34 (MQ=255)                                                                                                                                          tCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGAcggcagatcttcttccagagcgtgtatgacgcggcgggaggtctgcgactgaacaagcaggtgcctaagtccgatgacatccgtgagt                                    <  3:73680‑M2/122‑89 (MQ=255)                                                                                                                                              ccGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCg     <  7:11222/148‑1 (MQ=255)                                                                                                                                                ggCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGgtg  <  5:51576/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                      AGCTTGTCGACCACTGTCACCATGTACCCGAACGAGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGGTG  >  NC_002947/5070266‑5070557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.