New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5070409	47 (0.930)	3 (0.060)	3/246	NT	6.3%	coding (478/873 nt)	PP_4466	TauD/TfdA family dioxygenase
	?	NC_002947	= 5070436	44 (0.920)					coding (451/873 nt)	PP_4466	TauD/TfdA family dioxygenase

AGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGGTGTGCCAGGTCGCTTCGCTGTTACCCAAA  >  NC_002947/5070300‑5070584                                                                                                                                         |                                                                                                                                                      aGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGtctc                                                                                                                                           <  1:301726/149‑1 (MQ=255)          aCGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGt                                                                                                                                         >  7:285287/1‑142 (MQ=255)          aCGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGt                                                                                                                                         <  8:285287/142‑1 (MQ=255)            gATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCTTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGAt                                                                                                                                <  7:30183/149‑1 (MQ=255)                 cTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATc                                                                                                                           <  6:10119/149‑1 (MQ=255)                       aCTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATAcc                                                                                                                     >  2:266324/1‑149 (MQ=255)                           aCGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCaa                                                                                                                  >  2:73126/1‑148 (MQ=255)                            cGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGGAGTCCTCTCGCCGCGTCATACAAGCTGTGGAAGAAGATCTGTCTGCATTTGACTGCGTCCATTATATATGAGGGCATGGTCTCTTAAGCCTGATATATCGATATCCAATa                                                                                                                <  6:322482/149‑1 (MQ=255)                                       ggACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTcacca                                                                                                      <  1:73126/148‑1 (MQ=255)                                             aGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGt                                                                                                 <  7:253111/147‑1 (MQ=255)                                                 aCCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCgg                                                                                          <  5:260156/149‑1 (MQ=255)                                                   cTGCTTGTTCAGTCGCAGACCTCCCGCCGCATCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCgg                                                                                          >  1:181598/1‑147 (MQ=255)                                                    tGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAg                                                                                       >  1:315951/1‑149 (MQ=255)                                                      cTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGt                                                                                      <  3:166715/148‑1 (MQ=255)                                                              gTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAg                                                                             >  1:188258/1‑149 (MQ=255)                                                                   aGACGTCCCGGCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCgcag                                                                        <  2:221151/149‑1 (MQ=255)                                                                       cTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGa                                                                              >  2:275684/1‑139 (MQ=255)                                                                       cTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGt                                                                    >  8:208283/1‑149 (MQ=255)                                                                         cccGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACAt                                                                                                                            >  5:294707/1‑92 (MQ=255)                                                                         cccGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACAt                                                                                                                            <  6:294707/92‑1 (MQ=255)                                                                          ccgccgCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCt                                                                 >  8:11222/1‑149 (MQ=255)                                                                              cgcgTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAg                                                             <  7:208283/149‑1 (MQ=255)                                                                                    aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATa                                                                                                                >  5:162211/1‑93 (MQ=255)                                                                                    aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATa                                                                                                                <  6:162211/93‑1 (MQ=255)                                                                                    aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGGTGCGGAAGTGCAATGGAGCGCAGCAGTGCTCCa                                                              <  1:34895/143‑1 (MQ=255)                                                                                    aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCa                                                              >  2:34895/1‑142 (MQ=255)                                                                                    aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggtg                                                       >  8:270407/1‑149 (MQ=255)                                                                                    aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggtg                                                       <  1:266324/149‑1 (MQ=255)                                                                                    aTACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggt                                                        <  2:181598/148‑1 (MQ=255)                                                                                     tACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggtg                                                       >  6:306690/1‑148 (MQ=255)                                                                                      acacGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGAGACATCGATACCCAATAGGTGTCACCACCAGGGG‑GCGGAAGTGCACTGGAGCGCAGCAGTGCTCCCGCTGGTGGa                                                     >  6:51576/1‑149 (MQ=255)                                                                                         cGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGc                                                                  >  4:280189/1‑133 (MQ=255)                                                                                         cGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGc                                                                  <  3:280189/133‑1 (MQ=255)                                                                                               ggAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGAGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCg                                               >  1:76879/1‑146 (MQ=255)                                                                                                gaagaaGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGAcggcagatcttcttccagagcgtgtatgacgcggcgggaggtctgcgactgaacaagcaggtgcctaagtccgatgacatccgtgagtggccagggatcgtgcatcc                                            <  4:141071‑M2/149‑108 (MQ=255)                                                                                                 aagaagATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGaa                                          >  5:99970/1‑149 (MQ=255)                                                                                                      gaTCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTc                                                >  8:268395/1‑138 (MQ=255)                                                                                                      gaTCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTc                                                <  7:268395/138‑1 (MQ=255)                                                                                                        tCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGAcggcagatcttcttccagagcgtgtatgacgcggcgggaggtctgcgactgaacaagcaggtgcctaagtccgatgacatccgtgagt                                                               >  4:73680‑M2/1‑34 (MQ=255)                                                                                                        tCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGAcggcagatcttcttccagagcgtgtatgacgcggcgggaggtctgcgactgaacaagcaggtgcctaagtccgatgacatccgtgagt                                                               <  3:73680‑M2/122‑89 (MQ=255)                                                                                                            ccGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCg                                <  7:11222/148‑1 (MQ=255)                                                                                                              ggCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGgtg                             <  5:51576/149‑1 (MQ=255)                                                                                                                 cTTTGACTGCCTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggt                                                        <  7:62512/119‑1 (MQ=255)                                                                                                                 cTTTGACTGCATCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCtggt                                                        >  8:62512/1‑119 (MQ=255)                                                                                                                              cAGTAGATAGGACGGCACGGTCTCGTAAGCCTGATACATCGAAACCCAATAGGTCTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGTTGGACGCTCGTAGAACCAGGTATCCGTGTGCCAGGtcgcttcga             >  6:100563/1‑148 (MQ=255)                                                                                                                                gTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAg                                      >  8:101383/1‑122 (MQ=255)                                                                                                                                gTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAg                                      <  7:101383/122‑1 (MQ=255)                                                                                                                                      aGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGAGGACGCTCGTAGAACCAGGTATCGGTGTGCCAGGTCGCTTCGCTGTTAcc      >  3:274874/1‑148 (MQ=255)                                                                                                                                        gACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGGTGTGCCAGGTCGCTTCGCTGTTACCCa    >  3:101426/1‑148 (MQ=255)                                                                                                                                         aCGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGGTGTGCCAGGTCGCTTCGCTGTTACCCaaa  <  7:270407/149‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                      AGCGGATGCACGATCCCTGGCCACTCACGGATGTCATCGGACTTAGGCACCTGCTTGTTCAGTCGCAGACCTCCCGCCGCGTCATACACGCTCTGGAAGAAGATCTGCCGGCCTTTGACTGCGTCCAGTAGATAGGACGGCAGGGTCTCGTAAGCCTGATACATCGATACCCAATAGGTGTCACCACCAGTGG‑GCGGAAGTGCAATGGAGCGCAGCAGTGCTCCAGCTGGTGGACGCTCGTAGAACCAGGTATCGGTGTGCCAGGTCGCTTCGCTGTTACCCAAA  >  NC_002947/5070300‑5070584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.