New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5671638	34 (0.680)	4 (0.100)	4/210	NT	9.9%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5671675	45 (1.100)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

TCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTG  >  NC_002947/5671491‑5671786                                                                                                                                                    |                                                                                                                                                      tCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                       >  3:239752‑M1/1‑148 (MQ=255)   aGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGGAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagag                                                                                                                                                    <  6:101663/149‑1 (MQ=255)   aGTGCCTGCGACATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGGGATCCACCCTAGCCTGATCTGCCCGCAATACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAaga                                                                                                                                                     <  7:268348/148‑1 (MQ=255)       ccTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGc                                                                                                                                                 <  4:249460/148‑1 (MQ=255)       ccTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGCCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGc                                                                                                                                                 >  6:199406/1‑148 (MQ=255)          gcgcCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTTTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGACAGCAAcc                                                                                                                                             >  4:112886/1‑149 (MQ=255)             ccATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAcaccggcgaagcc                                                                                                                                          >  3:127196‑M1/1‑136 (MQ=255)                  cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGCCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGtt                                                                                                                                     <  5:199406/149‑1 (MQ=255)                       cTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCAc                                                                                                                                <  2:157312/149‑1 (MQ=255)                       cTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCCATCGTTGGCAc                                                                                                                                >  6:303141/1‑149 (MQ=255)                        tACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCAcc                                                                                                                               >  4:50702/1‑149 (MQ=255)                           ggCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGc                                                                                                                            <  6:290812/149‑1 (MQ=255)                                tCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGc                                                                                                                       <  6:191519/149‑1 (MQ=255)                                           gcggcgCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcg                                                                                                            <  8:12607‑M1/149‑44 (MQ=255)                                            cggcgCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcgg                                                                                                           <  4:239752‑M1/149‑45 (MQ=255)                                              gcgcAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggc                                                                                                         <  4:127196‑M1/149‑47 (MQ=255)                                                    ggATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgccc                                                                                                   >  5:331514‑M2/1‑134 (MQ=255)                                                     gATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACAGAGCAACCCGATCGTTGGCACCGGCTTCGCCCGTGttagcgggcacgcccg                                                                                                  <  4:36650‑M2/149‑17 (MQ=255)                                                          cGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATAGTTGGCACCGGCTTAGCCGGTGttagcgggcacccccgctcc                                                                                              <  8:42259‑M2/148‑21 (MQ=255)                                                          cGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCCTTGCCGCGAAGAGAGCAACCCGATGGTTGGCACCGGCTTCGCCCGTGttggcggggccccccgcgccc                                                                                             <  5:25315‑M2/149‑22 (MQ=255)                                                                  aTCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGTGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGa                                                                                     >  3:56684/1‑148 (MQ=255)                                                                      gctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGACCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAatg                                                                                >  2:254539/1‑149 (MQ=255)                                                                         gctaTCCACCCTAGCCTGTTGTGCCGGCAAAACTCATTTTCTTGCGGGGGCTTGTGGGTGCGGGGGTGCCGGGTAAGATTGCAACCCGTTGGTTGGCACGGGCTTCGCCGTTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAatgcat                                                                             <  2:110749/146‑1 (MQ=21)                                                                           gATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAatgcatgc                                                                           <  5:303141/149‑1 (MQ=255)                                                                                  ccAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTAcc                                                                    <  4:280933/149‑1 (MQ=255)                                                                                          gATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCg                                                            >  3:228803/1‑149 (MQ=255)                                                                                           aTGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCg                                                            <  1:237472/149‑1 (MQ=255)                                                                                                 ccGCAAAACTCATTGTTTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                     <  3:112886/149‑1 (MQ=255)                                                                                                  cGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                     <  7:220991/148‑1 (MQ=255)                                                                                                  cGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                     >  8:220991/1‑148 (MQ=255)                                                                                                   gaaaaaCTCATTGTCTTGCGCGGTCTTTTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCTATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTa                                                                      <  5:267036/128‑1 (MQ=255)                                                                                                            aTTGTCTTGCGCGGTCTTGTGGGAGCGGGCCTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTcc                                          >  2:203146/1‑149 (MQ=255)                                                                                                             ttGTCTTGCGCGGTCTTGTGGGAGTGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCg                                         <  4:56684/149‑1 (MQ=255)                                                                                                                    gcgcGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCAt                                    <  7:42259/147‑1 (MQ=255)                                                                                                                       cgGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCGGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCcac                               <  6:25315/149‑1 (MQ=255)                                                                                                                            ttGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATc                          >  3:212723/1‑149 (MQ=255)                                                                                                                                gggCGCGGGGGGCCCCGCCAAcacgggcgaagccggtgccaaccatcgggttgctctcttcgcggcaaggcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcg                       <  5:25315‑M1/149‑129 (MQ=255)                                                                                                                                 ggAGCGGGGGTGCCCGCTAAcaccggctaagccggtgccaactatcgggttgctctcttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcg                       <  8:42259‑M1/148‑129 (MQ=255)                                                                                                                                 ggAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGccc                      <  5:208445/148‑1 (MQ=255)                                                                                                                                  gAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGt                    <  3:50702/149‑1 (MQ=255)                                                                                                                                     cGGGCGTGCCCGCTAAcacgggcgaagccggtgccaacgatcgggttgctctgttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatc                  <  4:36650‑M1/149‑134 (MQ=255)                                                                                                                                      gggCGTGCCCGCGAAcaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatcc                 >  5:331514‑M1/1‑15 (MQ=255)                                                                                                                                        gCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTc              >  6:193818/1‑149 (MQ=255)                                                                                                                                            gCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgc           <  4:127196‑M2/149‑104 (MQ=255)                                                                                                                                            gCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGc                                  >  3:198401/1‑125 (MQ=255)                                                                                                                                            gCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGc                                  <  4:198401/125‑1 (MQ=255)                                                                                                                                             cccGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGAt         <  4:228803/149‑1 (MQ=255)                                                                                                                                              ccGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgccg         <  4:239752‑M2/149‑106 (MQ=255)                                                                                                                                              ccGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCA‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc        >  6:110090/1‑149 (MQ=255)                                                                                                                                               cgcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgccgc        <  8:12607‑M2/149‑107 (MQ=255)                                                                                                                                               cgcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATcc       >  1:12325/1‑149 (MQ=255)                                                                                                                                               cgcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATcc       >  5:50907/1‑149 (MQ=255)                                                                                                                                                gcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGGAGGCCTTTACCGTACACCGGCCGGGCGCGTAATCTCCGGCCATGCGCCATATCGCGCGGCTGTTCTggctgct      >  6:78988/1‑144 (MQ=37)                                                                                                                                                gcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCct      >  2:294581/1‑149 (MQ=255)                                                                                                                                                gcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCct      >  3:202427/1‑149 (MQ=255)                                                                                                                                                 cgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctg     <  1:294581/149‑1 (MQ=255)                                                                                                                                                    agagagCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgctg  >  6:167276/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTG  >  NC_002947/5671491‑5671786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.