New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5671638	34 (0.680)	4 (0.100)	4/210	NT	9.9%	intergenic (+57/‑113)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	= 5671675	45 (1.100)					intergenic (+94/‑76)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

GGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACG  >  NC_002947/5671542‑5671821                                                                                                                                      |                                                                                                                                                    ggATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgccc                                                                                                                                      >  5:331514‑M2/1‑134 (MQ=255)  gATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAACAGAGCAACCCGATCGTTGGCACCGGCTTCGCCCGTGttagcgggcacgcccg                                                                                                                                     <  4:36650‑M2/149‑17 (MQ=255)       cGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATAGTTGGCACCGGCTTAGCCGGTGttagcgggcacccccgctcc                                                                                                                                 <  8:42259‑M2/148‑21 (MQ=255)       cGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCCTTGCCGCGAAGAGAGCAACCCGATGGTTGGCACCGGCTTCGCCCGTGttggcggggccccccgcgccc                                                                                                                                <  5:25315‑M2/149‑22 (MQ=255)               aTCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGTGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGa                                                                                                                        >  3:56684/1‑148 (MQ=255)                   gctgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGACCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAatg                                                                                                                   >  2:254539/1‑149 (MQ=255)                      gctaTCCACCCTAGCCTGTTGTGCCGGCAAAACTCATTTTCTTGCGGGGGCTTGTGGGTGCGGGGGTGCCGGGTAAGATTGCAACCCGTTGGTTGGCACGGGCTTCGCCGTTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAatgcat                                                                                                                <  2:110749/146‑1 (MQ=21)                        gATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAatgcatgc                                                                                                              <  5:303141/149‑1 (MQ=255)                               ccAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTAcc                                                                                                       <  4:280933/149‑1 (MQ=255)                                       gATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCg                                                                                               >  3:228803/1‑149 (MQ=255)                                        aTGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCg                                                                                               <  1:237472/149‑1 (MQ=255)                                              ccGCAAAACTCATTGTTTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                                                        <  3:112886/149‑1 (MQ=255)                                               cGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                                                        <  7:220991/148‑1 (MQ=255)                                               cGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAgc                                                                                        >  8:220991/1‑148 (MQ=255)                                                gaaaaaCTCATTGTCTTGCGCGGTCTTTTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCTATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTa                                                                                                         <  5:267036/128‑1 (MQ=255)                                                         aTTGTCTTGCGCGGTCTTGTGGGAGCGGGCCTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTcc                                                                             >  2:203146/1‑149 (MQ=255)                                                          ttGTCTTGCGCGGTCTTGTGGGAGTGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCg                                                                            <  4:56684/149‑1 (MQ=255)                                                                 gcgcGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCAt                                                                       <  7:42259/147‑1 (MQ=255)                                                                    cgGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCGGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCcac                                                                  <  6:25315/149‑1 (MQ=255)                                                                         ttGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATc                                                             >  3:212723/1‑149 (MQ=255)                                                                              ggAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGccc                                                         <  5:208445/148‑1 (MQ=255)                                                                               gAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGt                                                       <  3:50702/149‑1 (MQ=255)                                                                                     gCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTc                                                 >  6:193818/1‑149 (MQ=255)                                                                                         gCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgc                                              <  4:127196‑M2/149‑104 (MQ=255)                                                                                         gCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGc                                                                     >  3:198401/1‑125 (MQ=255)                                                                                         gCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGc                                                                     <  4:198401/125‑1 (MQ=255)                                                                                          cccGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGAt                                            <  4:228803/149‑1 (MQ=255)                                                                                           ccGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgccg                                            <  4:239752‑M2/149‑106 (MQ=255)                                                                                           ccGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCA‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc                                           >  6:110090/1‑149 (MQ=255)                                                                                            cgcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgccgc                                           <  8:12607‑M2/149‑107 (MQ=255)                                                                                            cgcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATcc                                          >  1:12325/1‑149 (MQ=255)                                                                                            cgcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATcc                                          >  5:50907/1‑149 (MQ=255)                                                                                             gcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGGAGGCCTTTACCGTACACCGGCCGGGCGCGTAATCTCCGGCCATGCGCCATATCGCGCGGCTGTTCTggctgct                                         >  6:78988/1‑144 (MQ=37)                                                                                             gcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCct                                         >  3:202427/1‑149 (MQ=255)                                                                                             gcgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCct                                         >  2:294581/1‑149 (MQ=255)                                                                                              cgAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctg                                        <  1:294581/149‑1 (MQ=255)                                                                                                 agagagCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgctg                                     >  6:167276/1‑149 (MQ=255)                                                                                                      gCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCAATGCCACAAATCGCCCGTCTGTTCTGGATCCTGCTGCTCGt                                >  2:225125/1‑149 (MQ=255)                                                                                                        aaCCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGttt                              <  4:202427/149‑1 (MQ=255)                                                                                                         aCCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTg                             >  5:191791/1‑149 (MQ=255)                                                                                                         aCCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTg                             >  1:309393/1‑149 (MQ=255)                                                                                                           ccGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGcc                           >  7:61497/1‑149 (MQ=255)                                                                                                           ccGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGcc                           >  1:204017/1‑149 (MQ=255)                                                                                                             gATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTg                         <  1:203146/149‑1 (MQ=255)                                                                                                                 gcgaacACCGGCGAAGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGcc                     >  8:164667/6‑149 (MQ=255)                                                                                                                  ttGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGccc                    >  4:275064/1‑149 (MQ=255)                                                                                                                     gCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGtt                 >  3:18632/1‑149 (MQ=255)                                                                                                                       aCCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTgg               >  3:227813/1‑149 (MQ=255)                                                                                                                       aCCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTgg               >  2:254383/1‑149 (MQ=255)                                                                                                                          ggCTTCGCCGGTGttcgcgggcacgcccgctcccacaagaccgcgcaagacaatgagttttgcgggcacatcaggcttgggtggatcgcagcagatgcgcctcgatatccttgcgccgctcgcccagcgatagccgtagccccggatgg             >  3:127196‑M2/1‑13 (MQ=255)                                                                                                                               cGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTTTGCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTgg         <  1:225125/147‑1 (MQ=255)                                                                                                                               cGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGc                            >  5:295286/1‑128 (MQ=255)                                                                                                                               cGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGc                            <  6:295286/128‑1 (MQ=255)                                                                                                                               cGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGc       >  1:248955/1‑149 (MQ=255)                                                                                                                                    gtgtTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATTGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCCGAGCCCGTTGGCTCTGGGCGAACg  <  1:254539/149‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                    GGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCG‑CGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACG  >  NC_002947/5671542‑5671821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.