New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5825499 =	48 (0.950)	4 (0.080)	4/246	NT	8.1%	coding (796/813 nt)	thiG	thiazole synthase
	?	NC_002947	5825520 =	45 (0.940)					coding (775/813 nt)	thiG	thiazole synthase

TCCAGACCGCGTTGCTGGCCTTCGGTCATGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAGCACC  >  NC_002947/5825354‑5825644                                                                                                                                                  |                                                                                                                                                  tCCAGACCGCGTTGCTGGCCTTCGGTCATGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAg                                                                                                                                                >  4:280722/1‑149 (MQ=255) atggaaatgggctgtgaggcggtgctgatgaactcggccatcgcccacgcccagcagccagtgctgatggccgaggccatgaaacacgccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAg                                                                                                                                                <  3:269541‑M1/4‑1 (MQ=255)   ggaaatgggctgtgaggcggtgctgatgaactcggccatcgcccacgcccagcagccagtgctgatggccgaggccatgaaacacgccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAgcg                                                                                                                                              <  7:253792‑M1/6‑1 (MQ=255)   cAGACCGCGTTGCTGGCCTTCGGTCATGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAgcg                                                                                                                                              <  5:146701/149‑1 (MQ=255)   cAGACCGCGTTGCTGGCCTTCGGTCATGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAgcg                                                                                                                                              >  2:40566/1‑149 (MQ=255)     gACCGCGTTGCTGGCCTTCGGTCATGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAgcggc                                                                                                                                            <  1:234963/149‑1 (MQ=255)        cgcgTTGCTGGCCTTCGGTCATGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCgag                                                                                                                                         >  4:122035/1‑149 (MQ=255)                             tGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTttc                                                                                                                    >  7:282233/1‑149 (MQ=255)                               cgcCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATGGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTttctt                                                                                                                  <  7:209366/149‑1 (MQ=255)                               cgcCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTttct                                                                                                                   <  3:280722/148‑1 (MQ=255)                                gcCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTttcttc                                                                                                                 <  3:122035/149‑1 (MQ=255)                                  tcggccatcgcccacgcccagcagccagtgctgatggccgaggccatgaaacacgccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAgc                                                                                                                                               >  6:223016‑M1/113‑117 (MQ=255)                                  tcggccatcgcccacgcccagcagccagtgctgatggccgaggccatgaaacacgccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAgc                                                                                                                                               <  5:223016‑M1/5‑1 (MQ=255)                                  ccGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCgg                                                                                                               <  2:173945/149‑1 (MQ=255)                                       ccGCATCAAGAGCTTCGTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGAGTCAGTCGTCAGTTGCTCTTACTTGCTCAGACCATCCAGCGGCGAGGAGGCGCGGGCATAGAGTTTCTTCGGCATAc                                                                                                          >  8:227891/2‑149 (MQ=255)                                             ccacgcccagcagccagtgctgatggccgaggccatgaaacacgccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAgcg                                                                                                                                              >  3:188268‑M1/102‑107 (MQ=255)                                             ccacgcccagcagccagtgctgatggccgaggccatgaaacacgccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAgcg                                                                                                                                              <  4:188268‑M1/6‑1 (MQ=255)                                              aCGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCg                                                                                                                <  6:128571/136‑1 (MQ=255)                                              aCGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCg                                                                                                                >  5:128571/1‑136 (MQ=255)                                                gAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCTGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCg                                                                                                                <  5:279342/134‑1 (MQ=255)                                                gAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCTCTGGCATAGAGTTTCTTCg                                                                                                                >  6:279342/1‑134 (MQ=255)                                                gAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGAccagc                                                                                                   >  2:11511/1‑147 (MQ=255)                                                 aaGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGAccagccag                                                                                                <  1:192429/149‑1 (MQ=255)                                                              ggcggTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGCGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGGGCTGGCATAGAGTTTCTTCGGCa                                                                                                             >  4:187760/1‑123 (MQ=255)                                                              ggcggTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGCGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGGGCTGGCATAGAGTTTCTTCGGCa                                                                                                             <  3:187760/123‑1 (MQ=255)                                                                   tgtgGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCcgc                                                                              >  2:138039/1‑149 (MQ=255)                                                                     tgGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGa                                                                            >  6:231076/1‑149 (MQ=255)                                                                          gggcTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATg                                                                       <  1:11511/149‑1 (MQ=255)                                                                            gcTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGc                                                                     >  3:292337/1‑149 (MQ=255)                                                                              ttCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCgt                                                                   >  7:209195/1‑149 (MQ=255)                                                                              ttCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCgt                                                                   >  6:118096/1‑149 (MQ=255)                                                                                       gggggTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATgg                                                          <  5:118096/149‑1 (MQ=255)                                                                                       gggggTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATgg                                                          >  5:295340/1‑149 (MQ=255)                                                                                       gggggTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATg                                                           <  4:292337/148‑1 (MQ=255)                                                                                        gccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAGCGGCGAGGAGGCGCTGGCATa                                                                                                                           >  8:221727‑M1/59‑83 (MQ=255)                                                                                        gccattgtcgcgggtcgcatggcctacctggctggtcgtatgccgaagaaactctatgCCAGCGGCGAGGAGGCGCTGGCATa                                                                                                                           <  7:221727‑M1/25‑1 (MQ=255)                                                                                                  gCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCcgc                                                                              <  2:223784/118‑1 (MQ=255)                                                                                                       tCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCAc                                          >  4:269541/1‑149 (MQ=255)                                                                                                             gATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATg                                                                                      <  6:22514/99‑1 (MQ=255)                                                                                                             gATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATg                                                                                      >  5:22514/1‑99 (MQ=255)                                                                                                                tCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGctgctg                                 >  7:68494/1‑149 (MQ=255)                                                                                                                   gTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGc                                                         <  2:35672/122‑1 (MQ=255)                                                                                                                   gTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGc                                                         >  1:35672/1‑122 (MQ=255)                                                                                                                      atcaGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCtgggcgtg                           >  6:238060/1‑149 (MQ=255)                                                                                                                      atcaGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCtgggcgt                            <  6:295340/148‑1 (MQ=255)                                                                                                                      atcaGTAGCTCTTACTTGATGAGTCCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCTGCATACGAGGAGCCTGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCtgggcgtg                           <  8:209195/149‑1 (MQ=255)                                                                                                                       tcaGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCtgggcgtgg                          >  3:69943/1‑149 (MQ=255)                                                                                                                          gTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCtgggcgt                            >  4:36146/1‑144 (MQ=255)                                                                                                                          gTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCtgggcgt                            <  3:36146/144‑1 (MQ=255)                                                                                                                                 ttACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGc                  <  1:40566/147‑1 (MQ=255)                                                                                                                                   cgaagaaactctatgCCAGCGCCTCCTCGCCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCtgggcgtggg                         >  7:164138‑M1/16‑138 (MQ=255)                                                                                                                                   cgaagaaactctatgCCAGCGCCTCCTCGCCGCTGGCATAGAGTTTCTTCGGCATACGACCACCCAGGTAGGCCATGCGACCCGCGACAAAGGCGTGTTTCATGGCCTAGGCCATCAGCACAGGCTGCtgggcgtggg                         <  8:164138‑M1/123‑1 (MQ=255)                                                                                                                                   aCTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGa               <  8:68494/148‑1 (MQ=255)                                                                                                                                       gATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATg                                                                                      <  7:281079/73‑1 (MQ=255)                                                                                                                                       gATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATg                                                                                      >  8:281079/1‑73 (MQ=255)                                                                                                                                         tCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTtcatc        <  3:164274/149‑1 (MQ=255)                                                                                                                                         tCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACACGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTtcat         >  4:164274/1‑148 (MQ=255)                                                                                                                                            gACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAg      >  5:195787/1‑148 (MQ=255)                                                                                                                                            gACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAGc     <  7:227891/149‑1 (MQ=255)                                                                                                                                               cATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAGCAcc  >  5:244748/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  TCCAGACCGCGTTGCTGGCCTTCGGTCATGCGCCCGGCACGCATCACGAAGCTCTTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAGCACC  >  NC_002947/5825354‑5825644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.