New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5896619 | 33 (0.660) | 3 (0.060) | 3/246 | NT | 8.2% | coding (770/1029 nt) | sbp‑II | sulfate ABC transporter substrate‑binding protein |
? | NC_002947 | = 5896646 | 36 (0.750) | coding (743/1029 nt) | sbp‑II | sulfate ABC transporter substrate‑binding protein |
GCCGAACTGCGCAGCGACTTTCTCGTCACGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGCCATTGTTGACGAAGGTGA > NC_002947/5896480‑5896766 | gCCGAACTGCGCAGCGACTTTCTCGTCCCGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCa > 6:67368/1‑149 (MQ=255) gACTTTCTCGTCACGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCa < 3:152469/149‑1 (MQ=255) gACTTTCTCGTCACGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCa < 3:69087/149‑1 (MQ=255) gTCACGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGAtcgaca > 8:73808‑M2/1‑143 (MQ=255) tCACGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGAtcctggccgagccgccagtggccgtggtcgacaa < 3:88249‑M1/149‑35 (MQ=255) tCACGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAg > 2:253982/1‑149 (MQ=255) aCGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGAtcctggccgagccgccagtggccgtggtcgacaag < 6:305252‑M1/148‑36 (MQ=255) aCGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGAACACGGCCACTGGCGGCTCGGCCAGGATCGACAGc > 7:254765/1‑148 (MQ=255) gcgggcggTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGAtcctggccgagccgccagtggccgtggtcgacaagaac < 8:180984‑M1/149‑39 (MQ=255) gcgggcggTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGAc > 3:14068/1‑149 (MQ=255) gcgggcggTAAAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGAc > 7:76845/1‑149 (MQ=255) cggtcgtTAGAAGTTTTCTGCTGCAATCTTCTGCCCGGCCGTGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACg < 8:254765/149‑1 (MQ=255) ggcggcAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGGATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGTTCGACAGCGACGGCACGACGATCTCGAACt > 5:242882/1‑149 (MQ=255) gcggcAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACtt < 6:237611/149‑1 (MQ=255) gcAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACttgtt < 8:271122/149‑1 (MQ=255) ctGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGca < 1:199283/145‑1 (MQ=255) gCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCg > 3:108357/1‑149 (MQ=255) tACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAgg < 3:134646/147‑1 (MQ=255) tACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGAAGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGc > 4:237628/1‑149 (MQ=255) gCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAg > 8:246650/1‑149 (MQ=255) cTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAgg < 4:14068/149‑1 (MQ=255) aGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTc < 4:108357/149‑1 (MQ=255) aTTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGttt > 4:94503/1‑149 (MQ=255) ttCGATGGCAATCTCGGTATTGCTCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCacg > 5:216999/1‑91 (MQ=255) ttCGATGGCAATCTCGGTATTGCTCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCacg < 6:216999/91‑1 (MQ=255) ttCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGtttt < 7:246650/149‑1 (MQ=255) tGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCa < 8:76845/148‑1 (MQ=255) tGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAg > 5:120530/1‑149 (MQ=255) cAATCTCGGTAATGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGc > 1:143947/1‑148 (MQ=255) ggTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCaa < 5:67368/147‑1 (MQ=255) ggTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGAAGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGc < 3:237628/145‑1 (MQ=255) ccattcttcTCGGCGTTCATGTCGACCACGGCCACTTGCGGCTCGTCCAGGATCGACAGCGACGGCAAGACGATCTCGAACTTTTTGTCACCACCGTCTTCCTTCATGGCCAGGAAGGCTTAGTTTTCCCAGGCCATCAACACGTCGcc < 2:143947/146‑1 (MQ=255) ttctCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGc > 3:142921/1‑148 (MQ=255) ggCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGCCAttgt > 1:140192/1‑149 (MQ=255) gCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGGTCGACAGCGACGGGACGACGATCTCGAACTTGTTGTCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCATGCCAGCAACACGTCGCCCTGGCCAttgtt < 6:242882/149‑1 (MQ=255) gTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGAtcgacaagaacgccgagaagaagggcaataccgagattgccatcgaatacctcaagcacctgtacagcccggccgggcagaagattgccgccgagaacttctaccgcccgc < 8:180984‑M2/149‑112 (MQ=255) gTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGCCATTGTTGa < 6:28828/149‑1 (MQ=255) gTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGCCATTGTTGa < 3:94503/149‑1 (MQ=255) cTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGAtcgacaagaacgccgagaagaagggcaataccgagattgccatcgaatacctcaagcacctgtacagcccggccgggcagaagattgccgccgagaacttctaccgcccgcgt < 6:305252‑M2/148‑114 (MQ=255) ttGTCGACCACGGCCACTGGCGGCTCGGCCAGGAtcgacaagaacgccgagaagaagggcaataccgagattgccatcgaatacctcaagcacctgtacagcccggccgggcagaagattgccgccgagaacttctaccgcccgcgtga < 3:88249‑M2/149‑116 (MQ=255) tGTCGAtcctggccgagccgccagtggccgtggtcgacaagaacgccgagaagaagggcaataccgagattgccatcgaatacctcaagcacctgtacagcccggccgggcagaagattgccgccgagaacttctaccgcccgcgtgac > 8:73808‑M1/1‑6 (MQ=255) gTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGCCATTGTTGACGAAgg > 5:322842/1‑149 (MQ=255) gACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCt > 6:165757/1‑128 (MQ=255) gACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCt < 5:165757/128‑1 (MQ=255) gACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGCCATTGTTGACGAAGGTGa > 5:242319/1‑149 (MQ=255) | GCCGAACTGCGCAGCGACTTTCTCGTCACGCGGGCGGTAGAAGTTCTCGGCGGCAATCTTCTGCCCGGCCGGGCTGTACAGGTGCTTGAGGTATTCGATGGCAATCTCGGTATTGCCCTTCTTCTCGGCGTTCTTGTCGACCACGGCCACTGGCGGCTCGGCCAGGATCGACAGCGACGGCACGACGATCTCGAACTTGTTGGCACCACCGTCTTCCTTCAGGGCCAGGAAGGCTTCGTTTTCCCAGGCCAGCAACACGTCGCCCTGGCCATTGTTGACGAAGGTGA > NC_002947/5896480‑5896766 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |