New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	38445 =	62 (1.230)	5 (0.100)	3/246	NT	8.7%	coding (185/984 nt)	PP_0034	bactoprenol glycosyl‑transferase
	?	NC_002947	38482 =	46 (0.960)					coding (148/984 nt)	PP_0034	bactoprenol glycosyl‑transferase

CACTGCCACGGGCATGGTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAGCGAT  >  NC_002947/38338‑38616                                                                                                                                                 |                                                                                                                                       gttaaccatcgtggtcccttgcttccaggaagaggaaaccatccccgagttccaccagcgaatcgcccgcgtggtgaagcgcttacccgtctcctgcgaaatcctctATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATaga                                                                                                                                      >  8:235199‑M1/108‑147 (MQ=255) gttaaccatcgtggtcccttgcttccaggaagaggaaaccatccccgagttccaccagcgaatcacccgcgtggtgaagcgcttacccgtctcctgcgaaatcctctATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATagag                                                                                                                                     >  4:41068‑M1/108‑148 (MQ=255) gttaaccatcgtggtcccttgcttccaggaagaggaaaccatccccgagttccaccagcgaatcacccgcgtggtgaagcgcttacccgtctcctgcgaaatcctctATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATagag                                                                                                                                     >  7:228833‑M1/108‑148 (MQ=255)      ccACGGGCATGGTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTc                                                                                                                               <  2:11696/149‑1 (MQ=255)         cGGGCATGGTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGGAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCa                                                                                                                            <  3:270385/149‑1 (MQ=255)         cGGGCATGGTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCa                                                                                                                            <  8:12483/149‑1 (MQ=255)           ggCATGGTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAgg                                                                                                                          <  7:47473/149‑1 (MQ=255)                 gTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACgg                                                                                                                    <  7:34978/149‑1 (MQ=255)                 gTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACgg                                                                                                                    <  8:19909/149‑1 (MQ=255)                   cTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACggg                                                                                                                   >  5:265005/1‑148 (MQ=255)                      tCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGAGAGGCAAGGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAg                                                                                                               <  5:131126/149‑1 (MQ=255)                       cccGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAgc                                                                                                              <  7:299503/149‑1 (MQ=255)                         cGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAgcgc                                                                                                            >  2:246102/1‑149 (MQ=255)                         cGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAgcgc                                                                                                            <  6:202236/149‑1 (MQ=255)                           aggaagaggaaaccatccccgagttccaccagcgaatcacccgcgtggtgaagcgcttacccgtctcctgcgaaatcctctATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATagag                                                                                                                                     >  8:102846‑M1/82‑122 (MQ=255)                           aggaagaggaaaccatccccgagttccaccagcgaatcacccgcgtggtgaagcgcttacccgtctcctgcgaaatcctctATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATagag                                                                                                                                     <  7:102846‑M1/41‑1 (MQ=255)                              cTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTcac                                                                                                       >  6:284337/1‑149 (MQ=255)                                 aGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCg                                                                                                                              <  7:179957/123‑1 (MQ=255)                                 aGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCg                                                                                                                              >  8:179957/1‑123 (MQ=255)                                     cAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGGCATTACTGCCGTCGTCGCCGTAGACTATTTCGTAGGAGACGGGTAATCGCTTCACCACGCgg                                                                                                >  3:17631/1‑149 (MQ=255)                                              tGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGAtt                                                                                          <  1:246102/146‑1 (MQ=255)                                                ccGAAGGTGCGACTCAGGGTCAGGCAACGTAGAGATGACCCATCCTGCTTGTGGCGAAGAATGGCGGCCGTCCGGTCATTACTGCCGTCGTCGACGTAGAGGATTTCGTAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCt                                                                                      <  4:17631/148‑1 (MQ=255)                                                 cGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCtgg                                                                                    >  7:3080/1‑149 (MQ=255)                                                      ttGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGaa                                                                               >  1:268332/1‑149 (MQ=255)                                                        gCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTcac                                                                                                       >  8:73537/1‑123 (MQ=255)                                                        gCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTcac                                                                                                       <  7:73537/123‑1 (MQ=255)                                                                       gCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCct                                                              >  5:87737/1‑149 (MQ=255)                                                                        cAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCctc                                                             >  4:136451/1‑149 (MQ=255)                                                                        cAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCctc                                                             >  6:73543/1‑149 (MQ=255)                                                                         aaCGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCctct                                                            >  8:50543/1‑149 (MQ=255)                                                                          aCGTACAGATGACCCATCCTGATAGTGGCGAAGAATGGCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCtt                                                           <  7:90397/149‑1 (MQ=255)                                                                           cGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTc                                                          <  2:268332/149‑1 (MQ=255)                                                                             gaCAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCTGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGTCGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCt                                                        <  6:265005/148‑1 (MQ=255)                                                                                aGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTgg                                                      <  1:221248/148‑1 (MQ=255)                                                                                aGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTgg                                                      >  2:221248/1‑148 (MQ=255)                                                                                aGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTgg                                                      >  4:52451/1‑148 (MQ=255)                                                                                      cccATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAg                                               >  7:204359/1‑149 (MQ=255)                                                                                      cccATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAg                                               <  5:284337/149‑1 (MQ=255)                                                                                       ccATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAgg                                              <  6:87737/149‑1 (MQ=255)                                                                                       ccATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAgg                                              <  3:52451/149‑1 (MQ=255)                                                                                         aTCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGa                                            >  5:317132/1‑149 (MQ=255)                                                                                           ccTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGAcc                                          <  7:186730/149‑1 (MQ=255)                                                                                                     gCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGtt                                 >  2:249820/1‑148 (MQ=255)                                                                                                     gCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTa                                <  6:317132/149‑1 (MQ=255)                                                                                                        ctctatgtcgacgacggcagtaatgaccggacggccgacatAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCt                                                        <  7:102846‑M2/81‑1 (MQ=255)                                                                                                        ctctatgtcgacgacggcagtaatgaccggacggccgacatAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCt                                                        >  8:102846‑M2/42‑122 (MQ=255)                                                                                                        ctctatgtcgacgacggcagtaatgaccggacggccgacatAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAAc                              >  4:41068‑M2/42‑148 (MQ=255)                                                                                                        ctctatgtcgacgacggcagtaatgaccggacggccgacatAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAAc                              >  7:228833‑M2/42‑148 (MQ=255)                                                                                                         tctatgtcgacgacggcagtaatgaccggacggccgacatAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGCGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAAc                              >  8:235199‑M2/41‑147 (MQ=255)                                                                                                          gaaTGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAg                           >  1:305619/1‑149 (MQ=255)                                                                                                                     gTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCATGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGgcg                >  6:6893/1‑149 (MQ=255)                                                                                                                          gTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCgg           >  2:8294/1‑149 (MQ=255)                                                                                                                               tACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAg      >  1:208204/1‑149 (MQ=255)                                                                                                                                 cTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAGCg    <  7:50543/149‑1 (MQ=255)                                                                                                                                    ccGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAGCGAt  <  3:136451/148‑1 (MQ=255)                                                                                                                                    ccGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAGCGAt  <  8:3080/148‑1 (MQ=255)                                                                                                                                           cgacatAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCTTCTTCCTGGAAGCAAGGGACCACGATGGtt                                 <  1:219941‑M2/104‑1 (MQ=255)                                                                                                                                           cgacatAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCATCTTCCTGGAAGCAAGGGACCACGATGGtt                                 >  2:219941‑M2/7‑110 (MQ=255)                                                                                                                                                tAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAGCGAt  >  5:213825‑M2/2‑136 (MQ=255)                                                                                                                                                tAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAGCGAt  <  6:213825‑M2/135‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                       CACTGCCACGGGCATGGTCTATCCCGGCGCTCAGTGCAGCCTCTTTGCCGAAGTTGCGACTCAGGGACAGGCAACGTACAGATGACCCATCCTGATAGTGGCGAAGAATGTCGGCCGTCCGGTCATTACTGCCGTCGTCGACATAGAGGATTTCGCAGGAGACGGGTAAGCGCTTCACCACGCGGGTGATTCGCTGGTGGAACTCGGGGATGGTTTCCTCTTCCTGGAAGCAAGGGACCACGATGGTTAACAAGGGATCAGGGCGCTCGGGAAAGCGAT  >  NC_002947/38338‑38616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.