| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 210724 = | 68 (1.350) | 3 (0.060) | 3/244 | NT | 5.9% | coding (16230/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 215337 = | 31 (0.650) | coding (20843/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
GTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGC > NC_002947/215214‑215485 | accagtggcgtcctccgccgagttgatggccaggctgatctggccagcgtcgttgtaaacgtcatcaccctgcgcagcgtgggtgtacggcgcgctggtctcgccagccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCa < 8:113042‑M2/25‑1 (MQ=255) ccagtggcgtccaccgccgaggtgatgcccaggctgatctggccagcgtcgttgtaaacgtcatcaccctgcgcagcgtgggtgtacggcgcgctggtttcgccggccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAg < 5:210136‑M2/26‑1 (MQ=255) cagtggcgtccaccgccgaggtgatgcccaggctgatctggccagcgtcgttgtaaacgtcatcaccctgcgcagcgtgggtgtacggcgcgctggtttcgccggccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAgg < 6:199717‑M2/27‑1 (MQ=255) gtggcgtccaccgccgagttgatgcccaggctgatctggccagcgtcgttgtaaacgtcatcaccctgcgcagcgtgggtgtacggcgcgctggtctcgccagccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAGGTc < 6:132155‑M2/29‑1 (MQ=255) tggcgtctaccgccgaattgatgcccaggctgatctggccagcatcgttgtagacgtcatcgccttgcgcgtcgtgggtgtacggcgcgctggtttcgccggccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAGGTCa < 5:71967‑M2/30‑1 (MQ=255) tggcgtccaccgccgagttgatacccaggctgatctggccagcgtcgttgtagacgtcatcaccctgcgcagcgtgggtgtacggcgcgctggtttcgccagccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAGGTCa > 6:327101‑M2/120‑149 (MQ=255) gcgtccaccgccgagttgatacccaggctgatctggccagcgtcgttgtagacgtcatcaccctgcgcagcgtgggtgtacggcgcgctggtttcgccagccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAGGTCAcc < 5:327101‑M2/32‑1 (MQ=255) ccgaattgatgcccaggctgatctggccagcatcgttgtagacgtcatcgccttgcgcgtcgtgggtgtacggcgcgctggtttcgccggccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAGGt > 5:118049‑M2/108‑135 (MQ=255) ccgaattgatgcccaggctgatctggccagcatcgttgtagacgtcatcgccttgcgcgtcgtgggtgtacggcgcgctggtttcgccggccttgatggtgacctggTCGTGACCCTGAGCAACAACGCCCAGGt < 6:118049‑M2/28‑1 (MQ=255) cTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGaaa > 1:108982/1‑149 (MQ=32) cTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGaaa < 4:288981/149‑1 (MQ=32) gTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAg < 1:122747/149‑1 (MQ=32) tCAAGGTCTCCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAgc > 2:265719/1‑149 (MQ=17) aaGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑AATCCCCGTGCCCGTCAACCAGCCGCTGGCCCACGACCTGGTAGTGACCCTGAGCCACAACCCCCAGGTCACCATCCAGGCCGGCGAAACCAgccc > 1:84033/1‑147 (MQ=11) cATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATaca > 3:285655/1‑149 (MQ=34) cgccgACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACg > 8:163173/1‑149 (MQ=34) cgccgACCAGACCTCGCTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGCCCGGCGAAACCAGCGCGCCAAACACCCACg > 8:170218/1‑149 (MQ=255) ccAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCATGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTgcgc < 5:190866/149‑1 (MQ=21) ccAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTgcg > 8:264986/1‑148 (MQ=34) aGACCTCGGTGGCCGAGAACGTCAAGCCGACGCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTgcgc > 1:34113/1‑148 (MQ=21) caCCTCGGTGGCCGAGAACGTCAAGACGAC‑AATCACCGTGCACGTCAACCAGCCGCTCGCCCACGACCTCGTCGTGACCCTGAGCAACAAAGCCCAGGTAACCATAAAGCCCGCCGAAACCAGCGAGACATACACCAACGCTGCGCAAg > 8:34623/2‑149 (MQ=11) aCCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAgg < 3:250525/149‑1 (MQ=37) gCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACTCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGt < 6:137227/149‑1 (MQ=37) gagaACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTa > 5:130658/1‑149 (MQ=37) gagaACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTa < 7:16920/149‑1 (MQ=37) gaACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACa < 7:5914/149‑1 (MQ=37) aCGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGACCACGACCTGGTCGTGACCGTGAGCAACAACGCCCAGGTCACCATCAAGGCGGGCGAAACCAGCGCGCCATACAGCCACTCTGGGCAAGGCGATGACGTCTACaa < 7:34623/148‑1 (MQ=11) aGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCTCGACCTGGTCGTCACCCTGAGCAACAACGCCCAGGTCACCAACAAGGCCGGCGAAACCAGCGCGCCATACACCCACCCTGCGCAAGGCGATGACCTCTAAAACGACGCt > 1:298426/1‑149 (MQ=11) gAC‑CTTCACCGTGCACGTCAACCAGCAGCTGGCACACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCTAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGcc < 7:170218/149‑1 (MQ=255) c‑cTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAg < 6:130658/149‑1 (MQ=34) ccGTGCTCGTGAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGc < 3:221748/149‑1 (MQ=21) cACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTgg < 2:108982/148‑1 (MQ=34) cACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTgg < 7:163173/148‑1 (MQ=34) tCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCAt > 7:267223/1‑148 (MQ=34) aGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTcc > 1:194192/1‑149 (MQ=34) ccGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGc > 5:246205/1‑149 (MQ=34) cGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGAc < 5:74447/104‑1 (MQ=35) cGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCt < 7:264986/149‑1 (MQ=34) tcagggtcACGACCAGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCtg > 3:152680/8‑149 (MQ=255) gCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTgg < 2:194192/148‑1 (MQ=34) gCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGa > 4:271405/1‑149 (MQ=34) cccACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGAt > 4:74832/1‑149 (MQ=34) ccACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATg < 2:84033/149‑1 (MQ=34) gacctggTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTgg > 6:283319‑M2/8‑142 (MQ=255) gacctggTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTgg < 5:283319‑M2/135‑1 (MQ=255) cctggTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATc < 6:183286‑M2/122‑1 (MQ=255) cctggTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATc > 5:183286‑M2/6‑127 (MQ=255) cctggTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACg > 7:246303‑M2/6‑149 (MQ=255) gTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTc < 8:246303‑M2/147‑1 (MQ=255) gTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCg > 3:42243‑M2/2‑149 (MQ=255) tCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCg > 5:282557/1‑148 (MQ=34) tCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGc < 3:1107/149‑1 (MQ=34) | GTACGCCGGGCAACGAAGGCGACTTGGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGAC‑CTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCATACACCCACGCTGCGCAAGGCGATGACGTCTACAACGACGCTGGCCAGATCAGCCTGGGCATCACGTCCGCTGTGGATGTAGACGGTCGC > NC_002947/215214‑215485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |