New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 251034	53 (1.050)	3 (0.060)	3/248	NT	5.6%	coding (169/1347 nt)	nfeD	membrane bound peptidase NefD
	?	NC_002947	= 251061	51 (1.050)					coding (142/1347 nt)	nfeD	membrane bound peptidase NefD

CGCTGGGGGCAACGTAGCTGGCGACGGGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGCCAACGCCAGCAGCGGGCG  >  NC_002947/250917‑251197                                                                                                                                                     |                                                                                                                                         cgcTGGGGGCAACGTAGCTGGCGACGGGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTgcg                                                                                                                                       <  3:229591‑M2/148‑4 (MQ=255)   cTGGGGGCAACGTAGCTGGCGACGGGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCAc                                                                                                                                    >  6:20773/1‑149 (MQ=255)         gCAACGTAGCTGGCGACGTGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCATCCCGCGCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTa                                                                                                                              <  6:194126/149‑1 (MQ=255)               tAGCTGGCGACGGGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGgc                                                                                                                        <  8:253745/149‑1 (MQ=255)               tAGCAGGCGACGGGTTCGGTGCGGGAGCGCATGCCCTTGATCATCTGGCGCTTGTCACTGTCCAGCCCGCCCGGGGTATCCATCCGGATAACCACCAGTTGCGC‑GCCGT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGgc                                                                                                                        <  8:253561/149‑1 (MQ=255)                    ggCGACGGGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGCAGCCTC‑G‑GCCAGGCCCAGGCGCAAG‑GCcgcaactggtggttatccgc                                                                                                                       >  8:301900‑M2/1‑127 (MQ=255)                    ggCGACGGGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGCAGCCTC‑G‑GCCAGGCCCAGGCGCAAG‑GCcgcaactggtggttatccgc                                                                                                                       <  7:301900‑M2/147‑21 (MQ=255)                             tACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGa                                                                                                          <  1:248764/149‑1 (MQ=255)                               cGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGAt                                                                                                         <  4:313511/148‑1 (MQ=255)                               cGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATg                                                                                                        <  5:20773/149‑1 (MQ=255)                                             aTTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGtt                                                                                          <  4:229591/149‑1 (MQ=255)                                              ttGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTc                                                                                         <  5:242038/149‑1 (MQ=255)                                                  cTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAGCGCTGCGCACCAGGTAGTCGGCGCTgg                                                                                                                   <  1:4591/120‑1 (MQ=255)                                                  cTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTgg                                                                                                                   >  2:4591/1‑119 (MQ=255)                                                  cTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGACCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCa                                                                                     >  7:270746/1‑149 (MQ=255)                                                      atcatcTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCca                                                                                 <  5:149913/149‑1 (MQ=255)                                                       tcatcTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCcac                                                                                >  1:283838/1‑149 (MQ=255)                                                         atcTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCcaca                                                                               <  1:287258/148‑1 (MQ=255)                                                          tcTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACGcc                                                                             >  4:9675/1‑149 (MQ=255)                                                              gcgcATTGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTTAGCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTg                                                                                                                    <  1:67560/107‑1 (MQ=255)                                                              gcgcATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTg                                                                                                                    >  2:67560/1‑106 (MQ=255)                                                                gcATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTTGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCg                                                                       <  6:314744/149‑1 (MQ=255)                                                                   tGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGgc                                                                    >  5:147547/1‑149 (MQ=255)                                                                     gCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGACCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGgcg                                                                   <  8:270746/148‑1 (MQ=255)                                                                         tGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGcc                                                              >  5:265129/1‑149 (MQ=255)                                                                           tCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCt                                                             <  2:283838/148‑1 (MQ=255)                                                                                cccgcccgGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCAc                                                       >  1:155432/1‑149 (MQ=255)                                                                                         ggTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACGCCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGa                                              <  3:9675/149‑1 (MQ=255)                                                                                             tCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGcc                                          <  2:155432/149‑1 (MQ=255)                                                                                             tCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGc                                           >  3:194389/1‑148 (MQ=255)                                                                                                  gCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCg                                                                                                                          >  1:312394/1‑64 (MQ=255)                                                                                                  gCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCg                                                                                                                          <  2:312394/64‑1 (MQ=255)                                                                                                      aTAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGcaacaa                                 >  6:308483/1‑149 (MQ=255)                                                                                                        aaCCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGcaacaa                                 >  1:219297/1‑147 (MQ=255)                                                                                                        aaCCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGcaacaa                                 >  7:240318/1‑147 (MQ=255)                                                                                                         accaccAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAacaaca                               <  6:265129/148‑1 (MQ=255)                                                                                                         accaccAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAAcag                              >  4:108082/1‑149 (MQ=255)                                                                                                          ccaccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCAc                                                                                    >  5:215952/1‑94 (MQ=255)                                                                                                          ccaccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCAc                                                                                    <  6:215952/94‑1 (MQ=255)                                                                                                          ccaccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAAcagc                             <  4:194389/149‑1 (MQ=255)                                                                                                           caccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCa                                                                                        <  1:247114/89‑1 (MQ=255)                                                                                                           caccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCa                                                                                        >  2:247114/1‑89 (MQ=255)                                                                                                           caccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTgg                                                   <  4:243972/126‑1 (MQ=255)                                                                                                           caccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTgg                                                   >  3:243972/1‑126 (MQ=255)                                                                                                             ccaGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAAccgcag                           >  6:276954/1‑148 (MQ=255)                                                                                                                gTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTgcgcaactggtggttatccgcatggataccccgggcgggctggccagtggcatgcgcgagatgatcaagggaattgtctcaagcaccttacccgtcgccagctacgttgcccc                         <  3:177825‑M2/147‑114 (MQ=255)                                                                                                                   gcgc‑gcCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCaacaac                                <  8:243164/137‑1 (MQ=255)                                                                                                                   gcgc‑gcCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCaacaac                                >  7:243164/1‑137 (MQ=255)                                                                                                                    cgc‑gcCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGcc                   <  6:147547/149‑1 (MQ=255)                                                                                                                           tt‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGCCAACGc              >  3:289101/1‑148 (MQ=255)                                                                                                                              gcgcCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGCCAACGCcag           >  6:319363/1‑149 (MQ=255)                                                                                                                                gcctgggcctggC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGCCAACGCcagca         >  8:245774/1‑149 (MQ=255)                                                                                                                                      gcctggC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGCCAACGCCAGCAGCGGGc   >  5:332924/1‑149 (MQ=255)                                                                                                                                        ctggC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGGGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGCCAACGCCAGCAGCGGGCg  >  8:111325/1‑148 (MQ=255)                                                                                                                                         tggC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCATCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGcaa                                    >  4:276841/1‑113 (MQ=255)                                                                                                                                         tggC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCATCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGcaa                                    <  3:276841/113‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                         CGCTGGGGGCAACGTAGCTGGCGACGGGTACGGTGCTGGAGAGAATTGCCTTGATCATCTGGCGCATGGCACTGTCCAGCCCGCCCGGGGTATCCATGCGGATAACCACCAGTTGCGC‑GCCTT‑GCGCCTGGGCCTGGC‑CGAG‑GCTGCGCACCAGGTAGTCGGCGCTGGCCGGGCCGATGGCGTCGTCGATGTTCAGCACCCACACCGCGCCGGGCGCTGCCTGGCCACCTGGCGTGATGCCAAGCAACAACAGCAGCAACAGCCAACGCCAGCAGCGGGCG  >  NC_002947/250917‑251197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.