New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 291024	65 (1.290)	3 (0.060)	3/248	NT	5.3%	coding (85/594 nt)	ssuE	NAD(P)H‑dependent FMN reductase subunit
	?	NC_002947	= 291076	44 (0.910)					coding (137/594 nt)	ssuE	NAD(P)H‑dependent FMN reductase subunit

GGAAGCGCAGCAATGCTGGTCGTCTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGACCTGCTGCCCGAGC  >  NC_002947/290928‑291222                                                                                                                                                     |                                                                                                                                                   ggAAGCGCAGCAATGCTGGTCGTCTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGa                                                                                                                                                    >  7:1125/1‑149 (MQ=255)  gAAGCGCAGCAATGCTGGTCGTCTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGGGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGAc                                                                                                                                                   >  1:226189‑M2/1‑148 (MQ=255)  gAAGCGCAGCAATGCTGGTCGTCTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGAc                                                                                                                                                   <  4:196388‑M2/149‑2 (MQ=255)  gAAGCGCAGCAATGCTGGTCGTCTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGAc                                                                                                                                                   >  6:35199‑M2/1‑148 (MQ=255)            aaTGCTGGGCTTCTCAATCTGTTGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCTAGAGTTCGCGCCAGTGGCTTCAGGATCTCGGCGTTTAAGTTGTGACGTTCCAGGTGAGTGACTTTCCCTCCGAAGACCTGCTGCATg                                                                                                                                         <  1:104804/149‑1 (MQ=255)             aTGCTGGTCGTCTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGc                                                                                                                                        <  3:75286/149‑1 (MQ=255)                   gtcgtcTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGttt                                                                                                                                  <  8:28931/149‑1 (MQ=255)                    tcgtcTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTc                                                                                                                                 <  7:173181/149‑1 (MQ=255)                      gtcTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGa                                                                                                                               <  3:196388/149‑1 (MQ=255)                      gtcTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGa                                                                                                                               <  2:46964/149‑1 (MQ=255)                           aaTCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGTTCCTTCGCCCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACa                                                                                                                             <  1:264686/146‑1 (MQ=255)                                gtggtAGACCAAGTCTCCGTTCACGCTCCGGCGTGCAGCTCCACCGTTCGCGCCAGTCGCTGAAGGATCGCGGCGTTGAAGTTGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCAGCTGCATGCACGTTTCGACAGCCCGCAt                                                                                                                     >  7:52501/1‑149 (MQ=255)                                 tggtAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCAtg                                                                                                                    <  8:274719/149‑1 (MQ=255)                                        ccAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAaca                                                                                                             <  1:297431/149‑1 (MQ=255)                                            gTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGAGTTTCCCGCCGAAGACCTGCTGCATGACCGTTTCGACAGCCCGAATGTGCAACACtt                                                                                                          >  1:184531/1‑148 (MQ=255)                                            gTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACttt                                                                                                         >  7:96974/1‑149 (MQ=255)                                               tcCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCaa                                                                                                      >  4:176770/1‑149 (MQ=255)                                                ccGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCaa                                                                                                      >  1:51529/1‑148 (MQ=255)                                                 cGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCaa                                                                                                      <  2:111377/147‑1 (MQ=255)                                                     cACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCt                                                                                                 <  8:1125/148‑1 (MQ=255)                                                      aCGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCtgg                                                                                               >  5:89518/1‑149 (MQ=255)                                                        gCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCACGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCtggtg                                                                                             <  8:197690/149‑1 (MQ=255)                                                                       tCGAGCGTTCGCGCCAGTGGCTGCAGGATCGGGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGc                                                                              <  2:293137/149‑1 (MQ=255)                                                                       tCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGc                                                                              <  6:89518/149‑1 (MQ=255)                                                                       tCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGc                                                                              >  1:28013/1‑149 (MQ=255)                                                                         gAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCtggtg                                                                                             >  8:218378/1‑132 (MQ=255)                                                                         gAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCtggtg                                                                                             <  7:218378/132‑1 (MQ=255)                                                                         gAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCt                                                                            >  6:182591/1‑149 (MQ=255)                                                                           gCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTc                                                                                                        <  3:69274/119‑1 (MQ=255)                                                                           gCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTc                                                                                                        >  4:69274/1‑119 (MQ=255)                                                                             gTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATc                                                                        <  3:261030/149‑1 (MQ=255)                                                                                 gcgcCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACAATTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGtct                                                                    >  6:192044/1‑149 (MQ=255)                                                                                     cAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGAcctgcagccactggcgcgaacgctcgagcagcacgccggagcgtgaacggagacttgggctaccaccgattgagacgaccagca                                                                <  1:252719‑M2/149‑85 (MQ=255)                                                                                       gTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCAccc                                                              >  3:152311/1‑149 (MQ=255)                                                                                           cTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGgt                                                          <  5:182591/149‑1 (MQ=255)                                                                                            tGCAGGATTGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGAcctgcagccactggcgcgaacgctcgagcagcacgccggagcgtgaacggagacttgggctaccaccgattgagacgaccagcattgctgc                                                         <  4:36480‑M2/149‑92 (MQ=255)                                                                                            tGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGgtg                                                         >  5:134867/1‑149 (MQ=255)                                                                                                 gATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACaa                                                    >  4:59909/1‑149 (MQ=255)                                                                                                 gATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACATGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGCCCTGATCGTCTCCACCCCCGTGTAc                                                      >  7:119341/1‑147 (MQ=255)                                                                                                  aTCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAg                                                   <  3:59909/149‑1 (MQ=255)                                                                                                   tCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAgg                                                  >  5:118406/1‑149 (MQ=255)                                                                                                          gTTGAAGTGGTGACGGTCCAGGTTCGTTACTTTCCCGCCGAAGACCTTCTGCATGCCCGTTTCGACAGCGCGCATGTGCAAGACTTTCAACAGCTGGTGGCCCATGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCttt                                           <  8:52501/149‑1 (MQ=255)                                                                                                                   gtgACGTTCCAGGTGCGTGACTTTCCCGCCGAAGAcctgcagccactggcgcgaacgctcgagcagcacgccggagcgtgaacggagacttgggctaccaccgattgagacgaccagcattgctgcgcttccttgtgttctgttggag                                   >  3:36480‑M2/1‑35 (MQ=255)                                                                                                                   gtgACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCATCGTTTTCCGGTGc                                  >  6:306749/1‑149 (MQ=255)                                                                                                                        gTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTg                              >  4:188782/1‑148 (MQ=255)                                                                                                                            cAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAAc                         <  6:134867/149‑1 (MQ=255)                                                                                                                                 gCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACcttgc                    <  4:152311/149‑1 (MQ=255)                                                                                                                                      aCTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGa                <  2:28013/148‑1 (MQ=255)                                                                                                                                       cTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGAcc              >  8:212037/1‑149 (MQ=255)                                                                                                                                        tttCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGACct             >  5:160687/1‑149 (MQ=255)                                                                                                                                             cgccgAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGACCtgctgc        >  2:184908/1‑149 (MQ=255)                                                                                                                                                 gAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGATGGTGGCCCATGCTGATTGGCTGCTCGTCTACACCCCGGTGTTCAAGGCTTAGTTTTACGGTGCCCTGAAACCCATGCTTGAACTTCTTCCCGa    >  1:89180/1‑149 (MQ=255)                                                                                                                                                  aaGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGACCTGCTGCCCGAg   >  3:136891/1‑149 (MQ=255)                                                                                                                                                   aGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGACCTGCTGCCCGAgc  <  2:51529/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GGAAGCGCAGCAATGCTGGTCGTCTCAATCGGTGGTAGCCCAAGTCTCCGTTCACGCTCCGGCGTGCTGCTCGAGCGTTCGCGCCAGTGGCTGCAGGATCGCGGCGTTGAAGTGGTGACGTTCCAGGTGCGTGACTTTCCCGCCGAAGACCTGCTGCATGCCCGTTTCGACAGCCCGCATGTGCAACACTTTCAACAGCTGGTGGCCCAGGCTGATGGCCTGATCGTCTCCACCCCGGTGTACAAGGCTTCGTTTTCCGGTGCCCTGAAAACCTTGCTTGACCTGCTGCCCGAGC  >  NC_002947/290928‑291222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.