| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 448492 = | 47 (0.930) | 6 (0.120) | 6/256 | NT | 12.0% | coding (1071/1284 nt) | PP_0369 | diguanylate cyclase |
| ? | NC_002947 | 448533 = | 41 (0.820) | coding (1112/1284 nt) | PP_0369 | diguanylate cyclase | |||||
CCGGCAAGACCGCCGCGGAATGCGTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAATTGTGTCATGGTGCATGGGCGAC > NC_002947/448386‑448673 | ccGGCAAGACCGCCGCGGAATGCGTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACg > 5:119402/1‑149 (MQ=255) aaGACCGCCGCGGAATGCGTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGtctc > 5:250090/1‑149 (MQ=255) aGACCGCCGCGGAATGCGTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCg < 2:226095/149‑1 (MQ=255) cgccgcGGAATGCGTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCa > 5:235096/1‑149 (MQ=255) gtaaagcgcctggtcggcggatttcagcaccgcctcggggttgcgatgatcggcctggcgctcggccacgccgatactgatggtgaccgagaccgtaccgccgggcgccagcgccgggctggcagcgccggcggcaCGGTCTCg > 4:71038‑M2/137‑144 (MQ=255) gtaaagcgcctggtcggcggatttcagcaccgcctcggggttgcgatgatcggcctggcgctcggccacgccgatactgatggtgaccgagaccgtaccgccgggcgccagcgccgggctggcagcgccggcggcaCGGTCTCg < 3:71038‑M2/8‑1 (MQ=255) gcgcctggtcggcggatttcagcaccgcctcggggttgcgatgatcggcctggcgctcggccacgccgatactgatggtgaccgagaccgtaccgccgggcgccagcgccgggctggcagcgccggcggcaCGGTCTCGGTCACCATCa < 6:96009‑M2/18‑1 (MQ=255) cGTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATc < 1:62959/148‑1 (MQ=255) gTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGtctc > 6:205601/1‑131 (MQ=255) gTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGtctc < 5:205601/131‑1 (MQ=255) tGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGc < 7:19020/149‑1 (MQ=255) gCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCg > 4:52679/1‑149 (MQ=255) ccGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑CCTGGCAGCGCCCGCGGCACGGTCTCCGTCACCATCAGTAACGGCGt > 7:300645/1‑149 (MQ=255) aTGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCAGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGcc < 6:235096/149‑1 (MQ=255) gAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAgcg > 3:78961/1‑149 (MQ=255) gAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAgcg > 7:107947/1‑149 (MQ=255) aaGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAgcgc < 3:52679/149‑1 (MQ=255) gtgAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGat < 3:299896/149‑1 (MQ=255) aGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGatcatc < 8:185056/149‑1 (MQ=255) cGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGt < 7:137004/102‑1 (MQ=255) cGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGt > 8:137004/1‑102 (MQ=255) aTTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAg < 6:119402/149‑1 (MQ=255) gTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGCGGCGGt > 5:199367/1‑149 (MQ=255) tGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATcc > 1:300703/1‑149 (MQ=255) cgcgATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATccgc > 8:161731/1‑149 (MQ=255) cAGCACAACCGCCCGCAGGACGATACGCGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGAc > 1:2981/1‑148 (MQ=255) gCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCCGGGCTGTAATCCGCCGGCCAgg > 8:225367/1‑149 (MQ=255) tgatggtgaccgagaccgTGC‑CGCCGGCGCTGCCAGCCCGGC‑GCTGGC‑GC‑CCGGCGGTACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGgcgc < 6:96009‑M1/131‑1 (MQ=255) aaCCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCt > 4:277963/1‑149 (MQ=255) cgcAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTa < 3:252656/145‑1 (MQ=255) cgcAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTa > 4:252656/1‑145 (MQ=255) gcAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAgcgc > 5:232223/1‑88 (MQ=255) gcAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAgcgc < 6:232223/88‑1 (MQ=255) cgagaccgTGC‑CGCCGGCGCTGCCAGCCCGGC‑GCTGGC‑GC‑CCGGCGGTACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTAc < 3:71038‑M1/136‑1 (MQ=255) cgagaccgTGC‑CGCCGGCGCTGCCAGCCCGGC‑GCTGGC‑GC‑CCGGCGGTACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTAc > 4:71038‑M1/9‑144 (MQ=255) gACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCGGCGCCGGCGGCACGGTCTCGGTCACCATAAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCCCGGCGGTGCTGAAATACGCCGCCCAGGCGCGTTACAGTGCCa > 8:198637/1‑148 (MQ=255) gACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGatcatc < 6:214270/97‑1 (MQ=255) gACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGatcatc > 5:214270/1‑97 (MQ=255) TAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAGGgcg > 7:161731‑M1/1‑149 (MQ=255) TAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGgcg < 5:98795‑M1/149‑1 (MQ=255) c‑cgccgG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGcgcg > 4:31678/1‑149 (MQ=255) gccgG‑GT‑GCCCGCGCCTG‑TCTGGCCTCGCCGGCGGCACTGTCTCGGTCACCATCCTTATCGGCGTGGCCGAGCGCCAGGCCGATCATCTCAACCCCCAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCggg < 8:45476/149‑1 (MQ=255) cggcgctgccagcccggcgctggcgcccggcggcaCGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGgc > 4:193474‑M2/36‑149 (MQ=255) gctgccagcccggcgctggcgcccggcggcaCGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCaa < 3:193474‑M2/118‑1 (MQ=255) gcCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAAt < 3:31678/149‑1 (MQ=255) cAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAATtg > 6:93504/1‑149 (MQ=255) cAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAATtg < 4:78961/149‑1 (MQ=255) aGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAACGGCGCGGGGCGCAATtgt < 7:13462/149‑1 (MQ=255) ccagcccggcgctggcgcccggcggtaCGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAATtgt < 5:96009‑M2/122‑1 (MQ=255) cgcCGGCGCTGCCAGC‑CCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAATTgtgt > 6:137112/1‑149 (MQ=255) ccGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTg > 4:187757/1‑94 (MQ=255) ccGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTg > 4:191697/1‑94 (MQ=255) cggcggCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAATTGTGTCATGGTGCATGGGCGAc < 8:300645/149‑1 (MQ=255) ggcACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGgcgc < 7:224246/113‑1 (MQ=255) ggcACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGgcgc > 8:224246/1‑113 (MQ=255) | CCGGCAAGACCGCCGCGGAATGCGTGCCGCATGTGGAAGCCGTGCGTGAAGTGATCGCCAATTACGTGATGCACCTGCGCGATCAGCACAACCGCCCGCAGGACGATAC‑CGCCGG‑GC‑GCCAGCGCCGG‑GCTGGCAGCGCCGGCGGCACGGTCTCGGTCACCATCAGTATCGGCGTGGCCGAGCGCCAGGCCGATCATCGCAACCCCGAGGCGGTGCTGAAATCCGCCGACCAGGCGCTTTACAGTGCCAAAGGCGCGGGGCGCAATTGTGTCATGGTGCATGGGCGAC > NC_002947/448386‑448673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |