New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 731541	51 (1.010)	3 (0.060)	3/246	NT	5.8%	coding (1081/2565 nt)	clpB	chaperone protein ClpB
	?	NC_002947	= 731561	49 (1.020)					coding (1101/2565 nt)	clpB	chaperone protein ClpB

GTACCGCCAGTTCATCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGACCGC  >  NC_002947/731414‑731702                                                                                                                                                    |                                                                                                                                              gTACCGCCAGTTCATCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACg                                                                                                                                              >  3:277828‑M2/1‑148 (MQ=255)       ccAGTTCATCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCaa                                                                                                                                        >  7:227645/1‑149 (MQ=255)           ttCATCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAatcat                                                                                                                                    <  5:270965/149‑1 (MQ=255)               tCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCt                                                                                                                                >  1:22140/1‑149 (MQ=255)                      ggACGCCGCCGTGGTGCGGCGTTTCCAGATGGTGCTGGTCGTGGAGCCGAGCGAAGACGACACCATCACCCTCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGTCGGTGCAATCATCGCTGCGGCCa                                                                                                                         <  4:292078/149‑1 (MQ=255)                         cgccgcCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGc                                                                                                                      >  6:217240/1‑149 (MQ=255)                            cgccCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCt                                                                                                                     >  4:312534/1‑147 (MQ=255)                              cccTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAatcatc                                                                                                                                   <  3:166492/131‑1 (MQ=255)                              cccTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGAGCTATGAAGTGCACCACAAGGTGTCCATCACCGACGGAGCAatcatc                                                                                                                                   >  4:166492/1‑131 (MQ=255)                               ccTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGcc                                                                                                                <  7:159168/149‑1 (MQ=255)                               ccTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGc                                                                                                                 >  6:294513/1‑148 (MQ=255)                                   gAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGCTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCAt                                                                                                              <  5:183284/147‑1 (MQ=255)                                     gcgcCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCt                                                                                                          <  2:1781/149‑1 (MQ=255)                                      cgcCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCGCCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTa                                                                                                         <  8:23342/149‑1 (MQ=255)                                        ccGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCaa                                                                                                                        >  3:23779/1‑132 (MQ=255)                                        ccGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCaa                                                                                                                        <  4:23779/132‑1 (MQ=255)                                              ccAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACggtg                                                                                                                                           <  3:301097‑M2/107‑5 (MQ=255)                                              ccAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACggtg                                                                                                                                           >  4:301097‑M2/1‑103 (MQ=255)                                              ccAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCacc                                                                                                  <  5:217240/148‑1 (MQ=255)                                               cAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCaccga                                                                                                >  3:141669/1‑149 (MQ=255)                                                       gCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGc                                                                                        >  5:322001/1‑149 (MQ=255)                                                       gCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGc                                                                                        >  7:6322/1‑149 (MQ=255)                                                        cTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTa                                                                                                         >  5:310621/1‑131 (MQ=255)                                                        cTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTa                                                                                                         <  6:310621/131‑1 (MQ=255)                                                              gaggagCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCACTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCgg                                                                                  <  7:212404/148‑1 (MQ=255)                                                                   gCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAgg                                                                            <  8:6322/149‑1 (MQ=255)                                                                        gcgagGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCAtt                                                                       <  4:141669/149‑1 (MQ=255)                                                                           agGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGAc                                                                    <  3:312534/149‑1 (MQ=255)                                                                            ggAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGa                                                                     >  8:154544/1‑147 (MQ=255)                                                                            ggAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGa                                                                     <  7:154544/147‑1 (MQ=255)                                                                                   acCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATcga                                                            <  6:322001/149‑1 (MQ=255)                                                                                     cATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATcgac                                                           >  5:196177/1‑148 (MQ=255)                                                                                      aTCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATcgacg                                                          >  8:75869/1‑148 (MQ=255)                                                                                          ccATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGa                                                                                 >  2:46933/1‑121 (MQ=255)                                                                                          ccATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGa                                                                                 <  1:46933/121‑1 (MQ=255)                                                                                              ccTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCCCCGACGGTGCAATCATCGCTGCGGCCAAGCTAAGCCATCGCTACATCACCGCACGCGAGCTGCCGGACAAGGCCGATGACCTGCTCGACGAAGCgac                                                   >  5:250346/1‑145 (MQ=255)                                                                                              ccTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCa                                                 >  8:209780/1‑149 (MQ=255)                                                                                                 gCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGAc                                                                    <  6:127290/127‑1 (MQ=255)                                                                                                 gCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGAc                                                                    >  5:127290/1‑127 (MQ=255)                                                                                                   gTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGccgc                                            <  2:22140/149‑1 (MQ=255)                                                                                                        cTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGccgcatccg                                       >  3:121303/1‑149 (MQ=255)                                                                                                         tGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCAACggtgcacttcatagcgctctttcaggccacgcaggatggcgatggtgtcttcctcgctcggctcctcgaccagcaccttctggaaacggcgctccagggcggcgt                                      <  6:298258‑M2/149‑106 (MQ=255)                                                                                                              gagCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGga                                 <  5:294513/149‑1 (MQ=255)                                                                                                                    tATGAAGTGCACCACAAGGTGGCCATCACCGACggtgcacttcatagcgctctttcaggccacgcaggatggcgatggtgtcttcctcgctcggctcctcgaccagcaccttctggaaacggcgctccagggcggcgtccttttcgat                            <  5:72398‑M2/148‑116 (MQ=255)                                                                                                                      tGAAGTGCACCACAAGGTGGCCATCACCGACggtgcacttcatagcgctctttcaggccacgcaggatggcgatggtgtcttcctcgctcggctcctcgaccagcaccttctggaaacggcgctccagggcggcgtccttttcgatgaa                         <  1:18212‑M2/149‑119 (MQ=255)                                                                                                                       gAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATcga                                                            <  2:307226/113‑1 (MQ=255)                                                                                                                         aGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGcc                                              <  7:11432/125‑1 (MQ=255)                                                                                                                         aGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGcc                                              >  8:11432/1‑125 (MQ=255)                                                                                                                          gTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGAACTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTcag                      >  5:74340/1‑146 (MQ=255)                                                                                                                          ctGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACt                         <  6:74340/144‑1 (MQ=255)                                                                                                                              accacAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCg                 >  2:108358/1‑149 (MQ=255)                                                                                                                                cacaAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCgg                >  6:219330/1‑148 (MQ=255)                                                                                                                                cacaAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGACGCATCCGCATGGAGATCGACTCCAAGCCgg                >  8:60195/1‑148 (MQ=255)                                                                                                                                  caAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGc                                                                                     >  4:30128/1‑77 (MQ=255)                                                                                                                                  caAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGc                                                                                     <  3:30128/77‑1 (MQ=255)                                                                                                                                   aaGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGt            >  4:170430/1‑149 (MQ=255)                                                                                                                                       tGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTc        <  7:209780/149‑1 (MQ=255)                                                                                                                                                ccGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGACCGc  <  6:320387/146‑1 (MQ=255)                                                                                                                                                ccGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGACCGc  >  5:320387/1‑146 (MQ=255)                                                                                                                                                    |                                                                                                                                              GTACCGCCAGTTCATCGAAAAGGACGCCGCCCTGGAGCGCCGTTTCCAGAAGGTGCTGGTCGAGGAGCCGAGCGAGGAAGACACCATCGCCATCCTGCGTGGCCTGAAAGAGCGCTATGAAGTGCACCACAAGGTGGCCATCACCGACGGTGCAATCATCGCTGCGGCCAAGCTCAGCCATCGCTACATCACCGACCGCCAGCTGCCGGACAAGGCCATTGACCTGATCGACGAAGCGGCCAGCCGCATCCGCATGGAGATCGACTCCAAGCCGGAAGTGCTCGACCGC  >  NC_002947/731414‑731702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.