New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1558468 =	53 (1.050)	5 (0.110)	5/242	NT	10.0%	coding (433/732 nt)	PP_1369	hypothetical protein
	?	NC_002947	1558538 =	40 (0.850)					coding (363/732 nt)	PP_1369	hypothetical protein

TCCAGACCAGGCCTGGCGCATCAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGAAGTAGTCGACGGGGCTGCGCGGTACGGGGCCTTCGTC  >  NC_002947/1558390‑1558684                                                                                                                                                     |                                                                                                                                                   ttctacagccttgatgagaacgaagcgcttacccggctacaggagggcctggcactgttcgaggaccaagggtggcctGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCcaca                                                                                                                                                    >  5:275398‑M1/79‑149 (MQ=255)   ctacagccttgatgagaacgaagcgcttacccggctacaggagggcctggcactgttcgaggaccaagggtggcctGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAg                                                                                                                                                   >  8:59172‑M1/77‑148 (MQ=255)        cAGGCCTGGCGCATCAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCAcc                                                                                                                                             <  6:199216/149‑1 (MQ=255)            ccTGGCGCATCAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTg                                                                                                                                         <  7:304998/149‑1 (MQ=255)            ccTGGCGCATCAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTg                                                                                                                                         <  5:108490/149‑1 (MQ=255)            ccTGGCGCATCAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTg                                                                                                                                         <  3:93711/149‑1 (MQ=255)                 cgcATCAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCt                                                                                                                                    <  4:17115/149‑1 (MQ=255)                      cAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGaa                                                                                                                                >  6:148542/1‑148 (MQ=255)                       aaTCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGGTTACTGGTGTATTTCTGTGGCCGGCGGCACAGCGGTTGCCGCGTGCCCGGGATCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAAc                                                                                                                               <  1:88403/148‑1 (MQ=255)                        aTCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAg                                                                                                                             >  2:42878/1‑149 (MQ=255)                         tCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGt                                                                                                                            >  4:272019/1‑149 (MQ=255)                               tAAAGTCTGGCAAGCGGTACAGAAGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAgg                                                                                                                      >  6:98755/1‑149 (MQ=255)                                    tCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCcctc                                                                                                                 <  1:42878/149‑1 (MQ=255)                                          aaGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAg                                                                                                           <  4:58276/149‑1 (MQ=255)                                           aGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTacc                                                                                                          >  5:5352/1‑147 (MQ=255)                                            gCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGcc                                                                                                         <  5:148542/149‑1 (MQ=255)                                                tACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTc                                                                                                                                      <  1:273351/116‑1 (MQ=255)                                                tACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTc                                                                                                                                      >  2:273351/1‑116 (MQ=255)                                                   aGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAg                                                                                                  >  8:266171/1‑149 (MQ=255)                                                        cTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCt                                                                                              >  8:91099/1‑148 (MQ=255)                                                           aGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTg                                                                                                                           <  8:68651/116‑1 (MQ=255)                                                           aGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTg                                                                                                                           >  7:68651/1‑116 (MQ=255)                                                             gtgtACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTtc                                                                                        >  8:45173/1‑149 (MQ=255)                                                               gtACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTtct                                                                                       >  2:248832/1‑148 (MQ=255)                                                                tACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTtctc                                                                                      <  4:280105/148‑1 (MQ=255)                                                                tACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTtctc                                                                                      <  3:272019/148‑1 (MQ=255)                                                                  cTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCtcat                                                                                    <  1:323651/148‑1 (MQ=255)                                                                          tttCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAg                                                                                                                       <  5:60150/105‑1 (MQ=255)                                                                          tttCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAg                                                                                                                       >  6:60150/1‑105 (MQ=255)                                                                             ctgtggcagggtttgtcgcaccggcctggctcatgagccagggcacgcggcaagcgctgtgccgcctgccacAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAg                                                                         >  8:59172‑M2/73‑148 (MQ=255)                                                                              tgtggcagggtttgtcgcaccggcctggctcatgagccagggcacgcggcaagcgctgtgccgcctgccacAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGaa                                                                       >  5:275398‑M2/72‑149 (MQ=255)                                                                               gtggcagggtttgtcgcaccggcctggctcatgagccagggcacgcggcaagcgctgtgccgcctgccacAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTtctc                                                                                      >  7:299300‑M2/71‑133 (MQ=255)                                                                               gtggcagggtttgtcgcaccggcctggctcatgagccagggcacgcggcaagcgctgtgccgcctgccacAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTtctc                                                                                      <  8:299300‑M2/63‑1 (MQ=255)                                                                                  GCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTc                                                                    >  7:91099‑M1/1‑148 (MQ=255)                                                                                   CAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGc                                                                  >  5:98755‑M1/1‑149 (MQ=255)                                                                                        ggcACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCa                                                             >  2:307406/1‑149 (MQ=255)                                                                                           acaGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATgg                                                          <  7:266171/149‑1 (MQ=255)                                                                                            tcgcaccggcctggctcatgagccagggcacgcggcaagcgctgtgccgcctgccacAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATgg                                                          <  6:275398‑M2/91‑1 (MQ=255)                                                                                               cgcTTGCCGCGTGCCCTGGCTCACGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGta                                                       >  6:187476/1‑148 (MQ=255)                                                                                                       gcgTGCCCTGGCTCATGAGCAAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTAATGTAGCCGCGTAAGAGCTTCGTACTCATCAAGCCTGTAGAACTCGCCTTCATGGGTATAAATgagc                                              >  4:128457/1‑149 (MQ=255)                                                                                                          tGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGcgccgc                                           <  1:307406/149‑1 (MQ=255)                                                                                                           gCCCTGGTTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCa                                          >  8:124868/1‑149 (MQ=255)                                                                                                              cTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGa                                       <  7:45173/149‑1 (MQ=255)                                                                                                              cTGGCTCATGAGCAAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATg                                        >  4:78795/1‑148 (MQ=255)                                                                                                               tGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATg                                        >  5:142404/1‑147 (MQ=255)                                                                                                                 gCTCACGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGaa                                      <  5:187476/147‑1 (MQ=255)                                                                                                                    cATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGAagtagt                                 >  5:28817/1‑149 (MQ=255)                                                                                                                        aggcAGGCCGGTGCGACAATCCCTGCCACAGGCCACCCTTGGTGCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGGCGCATGAAGTAGTCGa                              <  6:5352/145‑1 (MQ=255)                                                                                                                         gCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGAAGTAGTCGACg                            >  6:283026/1‑149 (MQ=255)                                                                                                                                         aaaCCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGAAGTAGTCGACGGGGCTGCGCGGTACgg            <  7:124868/149‑1 (MQ=255)                                                                                                                                                   acAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGAAGTAGTCGACGGGGCTGCGCGGTACGGGGCCTTCGTc  <  1:248832‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCCAGACCAGGCCTGGCGCATCAATCGCCGTAAAGTCTGGCAAGCGGTACAGATGCTGAGGTGTACTGGTGTATTTCAGTGGCAGGCGGCACAGCGCTTGCCGCGTGCCCTGGCTCATGAGCCAGGCCGGTGCGACAAACCCTGCCACAGGCCACCCTTGGTCCTCGAACAGTGCCAGGCCCTCCTGTAGCCGGGTAAGCGCTTCGTTCTCATCAAGGCTGTAGAACTCGCCTTCATGGGTATAAATGCGCCGCATGAAGTAGTCGACGGGGCTGCGCGGTACGGGGCCTTCGTC  >  NC_002947/1558390‑1558684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.