New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1736845	42 (0.830)	4 (0.080)	4/248	NT	9.0%	coding (795/1035 nt)	dapD	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase
	?	NC_002947	= 1736867	41 (0.850)					coding (773/1035 nt)	dapD	2,3,4,5‑tetrahydropyridine‑2,6‑dicarboxylate N‑succinyltransferase

GTCGCGGGCCTTGACCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGCCCGGGCCTTCGGTGCCCGCGTTAAAGTT  >  NC_002947/1736719‑1737015                                                                                                                                                      |                                                                                                                                                     gTCGCGGGCCTTGACCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCt                                                                                                                                                      >  4:32116/1‑149 (MQ=255)   cgcgGGCCTTGACCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTcg                                                                                                                                                    <  1:280213‑M2/149‑3 (MQ=255)    gcgGGCCTTGACCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTcg                                                                                                                                                    >  2:280213‑M2/1‑146 (MQ=255)      gggCCTTGACCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTcgcc                                                                                                                                                  <  8:240695‑M2/148‑5 (MQ=255)          cTTGACCACTTTGACCAGTTCGTAGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACtt                                                                                                                                             <  3:191865/149‑1 (MQ=255)          cTTGACCACTTTGACCAGTTCGTAGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACtt                                                                                                                                             <  3:187949/149‑1 (MQ=255)             gACCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTtga                                                                                                                                          >  5:100398/1‑149 (MQ=255)              aCCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTtgat                                                                                                                                         >  5:295046/1‑149 (MQ=255)              aCCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTtgat                                                                                                                                         <  5:103686/149‑1 (MQ=255)              aCCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTtga                                                                                                                                          <  3:127843/148‑1 (MQ=255)                     tGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCTCCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATAGCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGAt                                                                                                                                   <  7:223445/148‑1 (MQ=255)                         cAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTgc                                                                                                                              >  7:46775/1‑149 (MQ=255)                               gttgttCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCAc                                                                                                                        <  6:100398/149‑1 (MQ=255)                                     ctcGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGa                                                                                                                    >  3:19164/1‑147 (MQ=255)                                     ctcGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGa                                                                                                                    >  8:105178/1‑147 (MQ=255)                                           cagcagGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTg                                                                                                             <  6:295046/148‑1 (MQ=255)                                             gcagGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGc                                                                                                            >  8:294073/1‑147 (MQ=255)                                             gcagGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGc                                                                                                            <  7:294073/147‑1 (MQ=255)                                              cagGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCa                                                                                                         >  3:106516/1‑149 (MQ=255)                                                ggTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATg                                                                                                       <  7:240695/149‑1 (MQ=255)                                                       cTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAgg                                                                                                                >  1:199681/1‑133 (MQ=255)                                                       cTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAgg                                                                                                                <  2:199681/133‑1 (MQ=255)                                                                          tACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGa                                                                             <  7:105178/149‑1 (MQ=255)                                                                           aCAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGccc                                                                                     <  4:300302/140‑1 (MQ=255)                                                                           aCAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGccc                                                                                     >  3:300302/1‑140 (MQ=255)                                                                                ccGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCtt                                                                       >  5:62983/1‑149 (MQ=255)                                                                                     ttCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGCAAGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAggg                                                                                                               <  1:229545/105‑1 (MQ=255)                                                                                     ttCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAggg                                                                                                               >  2:229545/1‑104 (MQ=255)                                                                                     ttCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCcga                                                                  >  5:258425/1‑149 (MQ=255)                                                                                         aCGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGaa                                                              <  3:32116/149‑1 (MQ=255)                                                                                         aCGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGaa                                                              <  6:62983/149‑1 (MQ=255)                                                                                            gtgtTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATAc                                                           >  5:231631/1‑149 (MQ=255)                                                                                               ttGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGc                                                         >  7:224208/1‑148 (MQ=255)                                                                                                  cGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAg                                                      <  4:106516/148‑1 (MQ=255)                                                                                                       gCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGaaa                                                >  6:154170/1‑149 (MQ=255)                                                                                                        cccAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAAc                                               >  8:7411/1‑149 (MQ=255)                                                                                                           aaCGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCATGTCCGa                                                                             <  7:97362/116‑1 (MQ=255)                                                                                                           aaCGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGa                                                                             >  8:97362/1‑116 (MQ=255)                                                                                                                    ccgataccgGCGTTGGCGCCGATCAGGC‑AGCCCTcgccggtatcggtattccgttgggcgaccgcaacaccgtcgaagccggcctgtacatcaccgcgggcaccaaggtgaacctgctggacgagaacaacgaactggtcaaagtg                                      <  6:72214‑M2/146‑113 (MQ=255)                                                                                                                    ccgataccgGCGTTGGCGCCGATCAGGC‑AGCCCTcgccggtatcggtattccgttgggcgaccgcaacaccgtcgaagccggcctgtacatcaccgcgggcaccaaggtgaacctgctggacgagaacaacgaactggtcaaagtg                                      >  5:72214‑M2/1‑34 (MQ=255)                                                                                                                    ccgataccgGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGAt                                   <  6:258425/149‑1 (MQ=255)                                                                                                                       ataccgGCGTTGGCGCCGATCAGGC‑AGCCCTcgccggtatcggtattccgttgggcgaccgcaacaccgtcgaagccggcctgtacatcaccgcgggcaccaaggtgaacctgctggacgagaacaacgaactggtcaaagtggtcaag                                <  5:257680‑M2/149‑119 (MQ=255)                                                                                                                         accgGCGTTGGCGCCGATCAGGC‑AGCCCTcgccggtatcggtattccgttgggcgaccgcaacaccgtcgaagccggcctgtacatcaccgcgggcaccaaggtgaacctgctggacgagaacaacgaactggtcaaagtggtcaaggc                              <  4:67313‑M2/149‑121 (MQ=255)                                                                                                                          ccgGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGcc                             <  6:231631/149‑1 (MQ=255)                                                                                                                           cgGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGccc                                                                                     <  2:208182/92‑1 (MQ=255)                                                                                                                           cgGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGccc                                                                                     >  1:208182/1‑92 (MQ=255)                                                                                                                           cgGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGcac                            >  4:86645/1‑147 (MQ=255)                                                                                                                            ggCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGCCCg                           >  6:107668/1‑149 (MQ=255)                                                                                                                                            aGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGCCCGGGCCTTCGGTGCCcgc           >  4:80385/1‑149 (MQ=255)                                                                                                                                             ggC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGCCCGGGCCTTCGGTGCCcgcg          >  5:57427/1‑149 (MQ=255)                                                                                                                                              gC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGCCCGGGCCTTCGGTGCCCGCGt         >  3:79029/1‑149 (MQ=255)                                                                                                                                                  gCCCTcgccggtatcggtattccgttgggcgaccgcaacaccgtcgaagccggcctgtacatcaccgcgggcaccaaggtgaacctgctggacgagaacaacgaactggtcaaagtggtcaaggcccgcgacctggccggccagaccga      >  3:67313‑M2/1‑5 (MQ=255)                                                                                                                                                      tCGCCGACCTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGCCCGGGCCTTCGGTGCCCGCGTTAAAGtt  >  2:180291/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GTCGCGGGCCTTGACCACTTTGACCAGTTCGTTGTTCTCGTCCAGCAGGTTCACCTTGGTGCCCGCGGTGATGTACAGGCCGGCTTCGACGGTGTTGCGGTCGCCCAACGGAATACCGATACCGGCGTTGGCGCCGATCAGGC‑AGCCCTCGCCGACTTTGATGACGATGTTGCCGCCACCGGACAGGGTGCCCATGGTCGAGCAGCCGCCGCCCAGGTCCGAGCCCTTGCCGACGAATACGCCAGCGGAAACGCGGCCTTCGATCATGCCCGGGCCTTCGGTGCCCGCGTTAAAGTT  >  NC_002947/1736719‑1737015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.