New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2112063	49 (0.970)	5 (0.100)	5/246	NT	9.7%	coding (2223/4899 nt)	PP_1882	membrane protein
	?	NC_002947	= 2112086	46 (0.960)					coding (2200/4899 nt)	PP_1882	membrane protein

CGGACGTTCATGCCGTTGCGGTTCTGCACCTGGGGTCGGGATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAGGATTTCGTAG  >  NC_002947/2111938‑2112222                                                                                                                                                       |                                                                                                                                          cGGACGTTCATGCCGTTGCGGTTCTGCACCTGGGGTCGGGATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGACCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGATGCTCCACGTCGTCCGGGCCGA‑‑TGGt                                                                                                                                           >  8:232148/1‑149 (MQ=255)   gACGGTCATGCCGTTGCGGTTCTGCACCTGGGGTCGGGATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGCGCCGA‑‑TGGTgc                                                                                                                                         >  6:300346‑M2/1‑147 (MQ=255)           tGCCGTTGCGGTTCACCACCTGGGGTCGGGATTTCAGTCTCCCGCCATCTCGCCAGCTGTAGCGAATGGCGCCCTGCTGATCGGCGTTGCCGATCGGCTCCAGTACGTAGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGc                                                                                                                                 >  4:160367/1‑149 (MQ=255)                   cGGTTCTGCACCTGGGGTCGGGATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCACCA‑‑TCGGCCCGGACGACGTGGAgcagcacaacgtactgga                                                                                                                         >  4:265776‑M2/1‑131 (MQ=255)                    ggTTCAGCACCTGGGGTCGGGATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAg                                                                                                                        >  7:291302/1‑149 (MQ=255)                          gCACCTGGGGTCGGGATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑tcgtcg                                                                                                                 >  6:310405/1‑149 (MQ=255)                                      gggATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGttttt                                                                                                     >  3:238529/1‑149 (MQ=255)                                       ggATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGcc                                                                                                                            <  4:287116/126‑1 (MQ=255)                                       ggATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGcc                                                                                                                            >  3:287116/1‑126 (MQ=255)                                             cAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTAcc                                                                                               <  5:310405/148‑1 (MQ=255)                                              aGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAg                                                                                             >  2:71993/1‑149 (MQ=255)                                               gTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAgg                                                                                            <  4:238529/149‑1 (MQ=255)                                                    ccGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTa                                                                                                               <  2:65451/125‑1 (MQ=255)                                                    ccGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTa                                                                                                               >  1:65451/1‑125 (MQ=255)                                                    ccGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAg                                                                                       >  8:24857/1‑149 (MQ=255)                                                            tcGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTActgct                                                                               >  4:187717/1‑149 (MQ=255)                                                                   cTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAGCTCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCtt                                                                         <  1:71993/149‑1 (MQ=255)                                                                   cTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑tcgtcg                                                                                                                 <  8:302814/108‑1 (MQ=255)                                                                   cTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑tcgtcg                                                                                                                 >  7:302814/1‑108 (MQ=255)                                                                    tGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTg                                                                        >  8:213247/1‑148 (MQ=255)                                                                      tAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGc                                                                       <  7:213247/147‑1 (MQ=255)                                                                        gCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGc                                                                    <  8:86863/148‑1 (MQ=255)                                                                        gCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGc                                                                    >  7:86863/1‑148 (MQ=255)                                                                         cGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGc                                                                    >  7:304254/1‑147 (MQ=255)                                                                           aaTGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGt                                                                <  7:232148/149‑1 (MQ=255)                                                                                 gcCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCg                                                              >  8:208636/1‑145 (MQ=255)                                                                                 gcCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCg                                                              <  7:208636/145‑1 (MQ=255)                                                                                      cccgATCGGCAACGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGc                                                                       <  1:299194/128‑1 (MQ=255)                                                                                      cccgATCGGCAACGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGc                                                                       >  2:299194/4‑131 (MQ=255)                                                                                       gTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAg                                                                                                                        >  5:58325/1‑82 (MQ=255)                                                                                       gTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAg                                                                                                                        <  6:58325/82‑1 (MQ=255)                                                                                        tGATCGGGGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACGGCGTTTTTGTTACGAGGTGCAGGTACTGCCGGGCTTGCAGCCAGTCGGTAACGCtctc                                                   <  2:155575/149‑1 (MQ=255)                                                                                         gATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTcc                                                  >  6:259586/1‑149 (MQ=255)                                                                                           tCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACATCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTg                                                >  5:178262/1‑149 (MQ=255)                                                                                              gCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTAt                                             >  5:131112/1‑149 (MQ=255)                                                                                                gTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATcc                                           <  8:291302/149‑1 (MQ=255)                                                                                                   gCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGt                                        >  5:75203/1‑149 (MQ=255)                                                                                                     cGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTg                                      <  2:133772/149‑1 (MQ=255)                                                                                                       agcGGGTCCAGTAGGTTGTGGTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTTGCCCCAT‑TGTTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTTGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGcc                                    <  7:210727/147‑1 (MQ=255)                                                                                                        tCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCg                                   >  7:277971/1‑149 (MQ=255)                                                                                                            gTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACg                               >  7:18501/1‑149 (MQ=255)                                                                                                                     gTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTgcagcacaacgtactggacccgatcggcaacgccgatcaccagggcgccattcgctacagctggcgagaaggcgggagactgaaatcccgaccccaggtgcagaaccgcaacggca                       <  1:179656‑M2/149‑117 (MQ=255)                                                                                                                     gTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACt                      <  2:7456/149‑1 (MQ=255)                                                                                                                      ttGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTgcagcacaacgtactggacccgatcggcaacgccgatcaccagggcgccattcgctacagctggcgagaaggcgggagactgaaatcccgaccccaggt                                        >  3:134292‑M2/1‑32 (MQ=255)                                                                                                                      ttGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTgcagcacaacgtactggacccgatcggcaacgccgatcaccagggcgccattcgctacagctggcgagaaggcgggagactgaaatcccgaccccaggt                                        <  4:134292‑M2/131‑100 (MQ=255)                                                                                                                          gctgctCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACAGAGTTTTTGTTACAAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATg                 >  3:170968/1‑149 (MQ=255)                                                                                                                           ctgctCCACATCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATg                 <  6:178262/148‑1 (MQ=255)                                                                                                                              ctCGACGTCGTACGGGCCGA‑‑TTGTGCAGCTTTGCTCGCCCGAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGTTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCa             <  3:160367/149‑1 (MQ=255)                                                                                                                               tCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAg            >  4:130203/1‑149 (MQ=255)                                                                                                                                 cACGTCGTCCGGGCCGA‑‑TGGTgcagcacaacgtactggacccgatcggcaacgccgatcaccagggcgccattcgctacagctggcgagaaggcgggagactgaaatcccgaccccaggtgcagaaccgcaacggcatgaacgtccga            >  3:265776‑M2/1‑21 (MQ=255)                                                                                                                                   cgtcgtCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAGGAtt        <  6:131112/149‑1 (MQ=255)                                                                                                                                    gtcgtcCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACAGGATGGCCAGGAttt       >  3:54999/1‑149 (MQ=255)                                                                                                                                       gtcCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAGGATTTCg     >  5:199562/1‑148 (MQ=255)                                                                                                                                       gtcCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAGGATTTCGt    <  8:18501/149‑1 (MQ=255)                                                                                                                                                 a‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTTTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAGGATTTCGTAg  <  5:168029/141‑1 (MQ=255)                                                                                                                                                 a‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAGGATTTCGTAg  >  6:168029/1‑141 (MQ=255)                                                                                                                                                       |                                                                                                                                          CGGACGTTCATGCCGTTGCGGTTCTGCACCTGGGGTCGGGATTTCAGTCTCCCGCCTTCTCGCCAGCTGTAGCGAATGGCGCCCTGGTGATCGGCGTTGCCGATCGGGTCCAGTACGTTGTGCTGCTCCACGTCGTCCGGGCCGA‑‑TGGTGCAGCATTGCTCGCCCCAG‑TCGTCGTACCGCGTTTTTGTTACCAGGTGCAGGTACTGCTGGGCTTGCAGCCAGTCGGTAACGCTCTCCTGTATCCGGTTGCCGTACGCATCGTACTGGATGGCCAGGATTTCGTAG  >  NC_002947/2111938‑2112222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.