New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2373103 | 48 (0.950) | 4 (0.080) | 4/246 | NT | 7.7% | intergenic (‑125/‑67) | PP_2081/ppsA | phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase |
? | NC_002947 | = 2373123 | 50 (1.040) | intergenic (‑145/‑47) | PP_2081/ppsA | phosphoenolpyruvate synthase regulatory protein/phosphoenolpyruvate synthetase |
ATTTGCGATCTGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCAGTAACCTCGCC > NC_002947/2372977‑2373271 | aTTTGCGATCTGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGcg > 2:19845‑M2/1‑147 (MQ=255) aTTTGCGATCTGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGc > 5:332718‑M2/1‑147 (MQ=255) tttGCGATCTGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGcgg < 5:128552‑M2/149‑4 (MQ=255) gCGATCTGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGcgggcg < 4:110676‑M2/149‑7 (MQ=255) aTCTGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCt > 1:77810/1‑149 (MQ=255) tGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCtttt > 5:322504/1‑149 (MQ=255) ggCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTTCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCAAAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCtttt > 5:159252/1‑147 (MQ=255) ggCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCtttt < 8:134794/147‑1 (MQ=255) gCCTTAAGATGATGTCGATTCTTGGATATGTTAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAg < 4:183338/149‑1 (MQ=255) gCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGGCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTcc < 6:277257/149‑1 (MQ=255) atgaCGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTcc > 5:84511/1‑145 (MQ=255) atgaCGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTcc < 6:84511/145‑1 (MQ=255) tgaGGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAaca < 5:191635/148‑1 (MQ=255) gaCGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAaca < 5:48639/147‑1 (MQ=255) gaCGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGACACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAaca > 6:48639/1‑147 (MQ=255) atGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGga > 5:178277/1‑144 (MQ=255) gATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAAcaca < 8:34701/133‑1 (MQ=255) gATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAAcaca > 7:34701/1‑133 (MQ=255) gATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGgaga > 2:248074/1‑144 (MQ=255) gATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGgaga < 1:248074/144‑1 (MQ=255) ttCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTgg < 6:178277/149‑1 (MQ=255) ggTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTa < 6:190688/148‑1 (MQ=255) ccGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAg < 4:127089/119‑1 (MQ=255) ccGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAg > 3:127089/1‑119 (MQ=255) gAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTa < 6:159252/149‑1 (MQ=255) aaTGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACTCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAg < 6:151720/149‑1 (MQ=255) ggCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTcc > 1:278723/1‑149 (MQ=255) tCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCg < 6:322504/148‑1 (MQ=255) cATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAg > 3:263200/1‑149 (MQ=255) gCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGc > 4:208435/1‑149 (MQ=255) gCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCAGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTa > 6:254590/1‑128 (MQ=255) gCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCAGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTa < 5:254590/128‑1 (MQ=255) ccACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCg > 4:278095/1‑149 (MQ=255) acaTTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTc > 1:4101/1‑149 (MQ=255) caTTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTc > 5:34317/1‑148 (MQ=255) gCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCatga < 3:208435/148‑1 (MQ=255) cAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCatgat < 2:4101/148‑1 (MQ=255) aGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGAtgt < 2:77810/149‑1 (MQ=255) aGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGAtgt < 3:110676/149‑1 (MQ=255) gcgcCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGAtgtg < 6:34317/149‑1 (MQ=255) gcgcCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGAtgtg < 6:128552/149‑1 (MQ=255) ttCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCAtgtg > 7:37729/1‑149 (MQ=255) ccAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTgg < 8:37729/148‑1 (MQ=255) aGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTggggg > 1:210244/1‑149 (MQ=255) gTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGc < 4:263200/149‑1 (MQ=255) cacaAACGCCCGGCCAAGTCATAGAAGACAGGcgggcgtttgtggcctgtacctggaaaataggcgctgcaaatgtggcagaatgtcgacagccgcattcgg > 5:236311‑M2/1‑32 (MQ=255) cacaAACGCCCGGCCAAGTCATAGAAGACAGGcgggcgtttgtggcctgtacctggaaaataggcgctgcaaatgtggcagaatgtcgacagccgcattcgg < 6:236311‑M2/102‑71 (MQ=255) caAACGCCCGGCCAAGTCATAGAAGACAGGcgggcgtttgtggcctgtacctggaaaataggcgctgcaaatgtggcagaatgtcgacagccgcattcggcaaaccgaacttatcatatccaagaatcgtcatcagcttaaggcc < 3:19466‑M2/145‑116 (MQ=255) aCGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCC‑TTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCt > 5:282090/1‑149 (MQ=255) gCCCGGCCAAGTCATAGAAGACAGGcgggcgtttgtggcctgtacctggaaaataggcgctgcaaatgtggcagaatgtcgacagccgcattcggcaaaccgaacttatcatatccaagaatcgtcatcagcttaaggcccagatcgca > 4:19466‑M2/1‑25 (MQ=255) gCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTg > 3:47733/1‑149 (MQ=255) gCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACC‑TGGTAGAGTACGTAGTTTACCGAGAAAAAGAAGGGGTGCATGATTTTGAGGATGGGGGGGGGAAGAACGCATaccatg > 7:265176/1‑146 (MQ=255) gCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGc > 4:128206/1‑118 (MQ=255) gCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGc < 3:128206/118‑1 (MQ=255) gCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTgggg > 2:239003/1‑126 (MQ=255) gCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTgggg < 1:239003/126‑1 (MQ=255) cAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGTAGAGATCACCTTGGTAGAGTCCTTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCATGAACGCATCCCTGGGCgaga < 3:270026/149‑1 (MQ=255) aTAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCa < 4:47733/149‑1 (MQ=255) tAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCAg > 6:201883/1‑149 (MQ=255) ttgcgggcgtttgtggcctgtacctggaaaataggcgctgcaaatgtggcagaatgtcgacagccgcattcggcaaaccgaacttatcatatccaagaatcgtcatcagcttaaggcccagatcgcaaatgaaacgaaccgcgttctt < 2:45329‑M2/146‑146 (MQ=255) aGGCGGCCCCCTATTCACCTTTTCCAACACAGTTAGTGGAGAGATCACCTAGGTAGAGTACCTAGTTTCCCACGATAAGCTCGGAGTCCAGGAAGAGGAGCATGTGGGGGCCAAGAACGCATCCCTGGGCGAGATGATCAGTAACCTCg > 6:177222/1‑149 (MQ=255) gcgggcgCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCAGTAACCTCGcc < 3:278095/149‑1 (MQ=255) | ATTTGCGATCTGGGCCTTAAGCTGATGACGATTCTTGGATATGATAAGTTCGGTTTGCCGAATGCGGCTGTCGACATTCTGCCACATTTGCAGCGCCTATTTTCCAGGTACAGGCCACAAACGCCCGGCCAAGTCATAGAAGACAGGCGGGCGCCTTTTGAGCTTTTCCAACACAGTTAGTGGAGAGATCACCTTGGTAGAGTACGTAGTTTCCCTCGATAAGCTCGGCGTCCATGATGTGGAGCATGTGGGGGGCAAGAACGCATCCCTGGGCGAGATGATCAGTAACCTCGCC > NC_002947/2372977‑2373271 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |