New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2871438	30 (0.600)	3 (0.060)	3/244	NT	10.1%	coding (216/657 nt)	PP_2524	HD domain‑containing protein
	?	NC_002947	= 2871463	25 (0.520)					coding (241/657 nt)	PP_2524	HD domain‑containing protein

GGCCCATATTCATCGTGTGTGGGTCAATGCGCACCGGATCCAGCGGGTGGAGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGCCTGCATCCTTCAGGA  >  NC_002947/2871315‑2871602                                                                                                                                                     |                                                                                                                                            ggCCCATATTCATCGTGTGTGGGTCAATGCGCACCGGATCCAGCGGGTGGAGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGt                                                                                                                                             >  7:28391/1‑149 (MQ=255)   cccATATTCATCGTGTGTGGGTCAATGCGCACCGGATCCAGCGGGTGGAGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTcg                                                                                                                                           >  6:302403‑M2/1‑147 (MQ=255)    ccATATTCATCGTGTGTGGGTCAATGCGCACCGGATCCAGCGGGTGGAGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTcgg                                                                                                                                          <  8:146191‑M2/149‑4 (MQ=255)              cGTGTGTGGGTCAATGCGCACCGGATCCAGCGGGTGGAGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGc                                                                                                                                >  5:58910/1‑149 (MQ=255)                                       tCCAGCGGGTGGAGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATggtc                                                                                                       >  8:297495/1‑147 (MQ=255)                                                   aGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTggg                                                                                           <  6:93686/149‑1 (MQ=255)                                                    gggTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGc                                                                                          >  5:133986/1‑149 (MQ=255)                                                           gACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGa                                                                                   <  7:173202/149‑1 (MQ=255)                                                              cTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAg                                                                                  >  7:189122/1‑147 (MQ=255)                                                              cTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCa                                                                                <  6:133986/149‑1 (MQ=255)                                                                   aaTCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTa                                                                            <  7:146191/148‑1 (MQ=255)                                                                    atgtttgttgcGGCGACGGTTGTTCACGACTGTGTGTCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAg                                                                           <  8:207264/141‑1 (MQ=255)                                                                         gcttgcGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGc                                                                        <  6:58910/146‑1 (MQ=255)                                                                         gcttgcGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGAATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCAt                                                                      <  4:205961/148‑1 (MQ=255)                                                                             gcggcgACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGa                                                                  <  8:189122/148‑1 (MQ=255)                                                                                       tgctgcACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAacaca                                                        >  6:148622/1‑148 (MQ=255)                                                                                          tgcACGACTGTGTGGCGGTGGGAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGt                                                    >  6:232604/1‑149 (MQ=255)                                                                                                                aaaGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTcggcgaatgcttttccaccgccacacagtcgtgcagcaccgtcgccgcaagcaagatttcaaggtcgccaccctccacccgctggatccggtgc                                               <  1:283782‑M2/132‑95 (MQ=255)                                                                                                                aaaGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTcggcgaatgcttttccaccgccacacagtcgtgcagcaccgtcgccgcaagcaagatttcaaggtcgccaccctccacccgctggatccggtgc                                               >  2:283782‑M2/1‑38 (MQ=255)                                                                                                                 aaGCATTCGCCGTTACGTGGGCAGGCCTCTACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCt                             >  5:144605/1‑149 (MQ=255)                                                                                                                   gCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTcggcgaatgcttttccaccgccacacagtcgtgcagcaccgtcgccgcaagcaagatttcaaggtcgccaccctccacccgctggatccggtgcgcattgacccacacacgat                            <  5:129610‑M2/148‑114 (MQ=255)                                                                                                                      ttCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGacac                        >  3:305072/1‑149 (MQ=255)                                                                                                                             ttACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGc                 <  7:297495/149‑1 (MQ=255)                                                                                                                                cGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGc                                                                                          >  4:76564/1‑73 (MQ=255)                                                                                                                                cGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGCCt               <  8:28391/148‑1 (MQ=255)                                                                                                                                cGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGCCt               <  5:148622/148‑1 (MQ=255)                                                                                                                                     gCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGCCTGCATcc         >  2:108268/1‑149 (MQ=255)                                                                                                                                         gCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCAGGCGATCAAAACCCACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGCCTGCATCCtt       >  7:53999/1‑147 (MQ=255)                                                                                                                                            tCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGCCTGCATCCTTCAGGa  >  3:171556/1‑149 (MQ=255)                                                                                                                                              gACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCt                                                                                                      <  8:132180/47‑1 (MQ=255)                                                                                                                                              gACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCt                                                                                                      >  7:132180/1‑47 (MQ=255)                                                                                                                                                     |                                                                                                                                            GGCCCATATTCATCGTGTGTGGGTCAATGCGCACCGGATCCAGCGGGTGGAGGGTGGCGACCTTGAAATCTTGCTTGCGGCGACGGTGCTGCACGACTGTGTGGCGGTGGAAAAGCATTCGCCGTTACGTGGGCAGGCCTCGACGTTGTCGGCGAACAAGGCTGCATCAGTCCTTGCTGAGATGGGCTGGCCGAGTGGGCGTGTTGAGCAGGTAGTGCATGCGATCAAAACACACAGTTACTCGGCGGGGTTCGAACCGCTGACACGTGAGGCCTGCATCCTTCAGGA  >  NC_002947/2871315‑2871602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.