New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3274590	46 (0.910)	5 (0.100)	5/246	NT	10.9%	coding (348/885 nt)	eamA	O‑acetylserine/cysteine export transporter
	?	NC_002947	= 3274661	38 (0.790)					coding (419/885 nt)	eamA	O‑acetylserine/cysteine export transporter

TCGCAAGCCTTCTTCACCCTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATACCGCCACTTCCATTCCTGGCACTG  >  NC_002947/3274525‑3274800                                                                                                                                         |                                                                                                                                            tCGCAAGCCTTCTTCACCCTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTCATGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGt                                                                                                                                 >  5:10019/1‑149 (MQ=255)   gCAAGCCTTCTTCACCCTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGc                                                                                                                               >  1:174991/1‑149 (MQ=255)        ccTTCTTCACCCTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGAcc                                                                                                                          <  3:99506/149‑1 (MQ=255)               cACCCTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCtgt                                                                                                                      <  3:252016/146‑1 (MQ=255)                aCCCTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTgg                                                                                                                  >  6:303699/1‑149 (MQ=255)                   cTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCgg                                                                                                               >  3:136627/1‑149 (MQ=255)                       gTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGc                                                                                                            >  3:37157/1‑148 (MQ=255)                             ctgcGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTgg                                                                                                     >  1:264589/1‑149 (MQ=255)                              tgcGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTggg                                                                                                    >  3:268635/1‑149 (MQ=255)                               gcGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGAtgtg                                                                                                      <  2:257014/146‑1 (MQ=255)                               gcGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCAGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGAtgtg                                                                                                      >  1:257014/1‑146 (MQ=255)                                cGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCTGCGTGCTGGGGCTGCTGGTGGGTGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGc                                                                                                  <  4:274253/149‑1 (MQ=255)                                cGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTgggg                                                                                                   <  1:86908/148‑1 (MQ=255)                                    gttTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTg                                                                                               <  4:37157/148‑1 (MQ=255)                                    gttTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTCTGGCGGTGCGATGTGGGGCCTgg                                                                                              >  5:49602/1‑149 (MQ=255)                                     tttCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCg                                                                                                           >  5:64263/1‑135 (MQ=255)                                     tttCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCg                                                                                                           <  6:64263/135‑1 (MQ=255)                                           ggTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCaa                                                                                          <  2:264589/146‑1 (MQ=255)                                           ggTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAAcat                                                                                       <  4:136627/149‑1 (MQ=255)                                                         ccTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATgctggccaggcgcagccgctcaccgagaaacaacgcagcaaaaccgagggtgaagaaggcttgcgact                                                                         <  3:276060‑M2/149‑69 (MQ=255)                                                          cTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATgctggccaggcgcagccgctcaccgagaaacaacgcagcaaaaccgagggtgaagaaggcttgcgactg                                                                        <  2:237634‑M2/149‑70 (MQ=255)                                                          cTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGtt                                                                        >  2:250924/1‑149 (MQ=255)                                                             gCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATgctggccaggcgcagccgctcaccgagaaacaacgcagcaaaaccgagggtgaagaaggcttgcgactgcag                                                                     <  8:226317‑M2/149‑73 (MQ=255)                                                             gCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCgg                                                                     >  1:307805/1‑149 (MQ=255)                                                                    tGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAAcat                                                                                       <  1:131556/124‑1 (MQ=255)                                                                    tGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAAcat                                                                                       >  2:131556/1‑124 (MQ=255)                                                                       tGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATgctggccaggcgcagccgctcaccgagaaacaacgcagcaaaaccgagggtgaagaaggcttgcgactgcaggatcaacgaa                                                           >  4:276060‑M2/1‑67 (MQ=255)                                                                       tGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGAc                                                           <  2:307805/149‑1 (MQ=255)                                                                                       ggccggcggccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCg                                                                      <  3:117532/122‑1 (MQ=255)                                                                                       ggccggcggccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCg                                                                      >  4:117532/1‑122 (MQ=255)                                                                                       ggccggcggccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGa                                           <  8:200451/149‑1 (MQ=255)                                                                                           ggcggccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTg                                       <  6:49602/149‑1 (MQ=255)                                                                                                ccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTg                                  >  5:280568/1‑149 (MQ=255)                                                                                                ccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTg                                  <  5:303699/149‑1 (MQ=255)                                                                                                ccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTg                                  <  6:280568/149‑1 (MQ=255)                                                                                                ccTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTg                                  <  1:250924/149‑1 (MQ=255)                                                                                                          aTCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATAcc                        <  6:104831/149‑1 (MQ=255)                                                                                                              gctgCGATGACGGCGGCCATGTGGCCATGCTGGCGTTGGTGGTGTCCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACGCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATACCGCCa                    <  6:10019/146‑1 (MQ=255)                                                                                                              gCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCCACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATACCGCCa                    >  6:238894/1‑149 (MQ=255)                                                                                                                      gACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATACCGCCACTTCCAtt            >  5:24759/1‑149 (MQ=255)                                                                                                                         ggcggcCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATACCGCCACTTCCATTCCt         <  2:174991/149‑1 (MQ=255)                                                                                                                               cATGTGCCCATgctggccaggcgcagccgctcaccgagaaacaacgcagcaaaaccgagggtgaagaaggcttgcgactgcaggatcaacgaagccaaccctggcggcatgccgctgtacatggcctgaaacaggaacgcgaactggcc   >  7:226317‑M2/1‑11 (MQ=255)                                                                                                                                aTGTGCCCATGCTGGCGTTGGTGCGGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATACCGCCACTTCCATTCCTGGCACTg  <  5:238894/149‑1 (MQ=255)                                                                                                                                         |                                                                                                                                            TCGCAAGCCTTCTTCACCCTCGGTTTTGCTGCGTTGTTTCTCGGTGAGCGGCTGCGCCTGGCCAGCGTGCTGGGGCTGCTGGTGGCGGCCGGCGGCCTGGCACTGATCGGCAGCGAAGACGGCGGCCATGTGCCCATGCTGGCGTTGGTGCTGACCCTGTGTGGCGGTGCGATGTGGGGCCTGGGCAACATCATTACCCGACGGTTCGGCTCGGTCGACCTGGTCGCGTTGGTGATCTGGGGTGGGCTGATACCGCCACTTCCATTCCTGGCACTG  >  NC_002947/3274525‑3274800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.