New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3361090 =	51 (1.010)	5 (0.110)	4/238	NT	9.9%	coding (177/1581 nt)	PP_2956	ribosomal protein S6 modification protein‑like protein
	?	NC_002947	3361133 =	44 (0.950)					coding (134/1581 nt)	PP_2956	ribosomal protein S6 modification protein‑like protein

GAGCAGCGAGCAGTAGTAGCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGACATGAGTATTCGATCCCT  >  NC_002947/3360988‑3361281                                                                                                                                                  |                                                                                                                                                     gagcagcgagcagTAGTAGCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCtt                                                                                                                                                   >  3:176699/1‑149 (MQ=255)    cagcgagcagTAGTAGCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCt                                                                                                                                                >  7:274901/1‑149 (MQ=255)      gcgagcagTAGTAGCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTg                                                                                                                                              >  2:212741/1‑149 (MQ=255)         agcagTAGTAGCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTgcgc                                                                                                                                           >  4:307353/1‑149 (MQ=255)               agtagCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTccac                                                                                                                                      <  8:274901/148‑1 (MQ=255)                gtagCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTccacc                                                                                                                                     <  5:152315/148‑1 (MQ=255)                    ccTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTgcgc                                                                                                                                           >  1:153524/1‑138 (MQ=255)                    ccTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTgcgc                                                                                                                                           <  2:153524/138‑1 (MQ=255)                     cTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGAt                                                                                                                                >  1:102112/1‑148 (MQ=255)                     cTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGAt                                                                                                                                >  4:234258/1‑148 (MQ=255)                           ccAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCtt                                                                                                                                                   >  7:302537/1‑123 (MQ=255)                           ccAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCtt                                                                                                                                                   <  8:302537/123‑1 (MQ=255)                              gATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCgg                                                                                                                      <  1:212741/149‑1 (MQ=255)                                   ttGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCcaccac                                                                                                                                   >  1:63360/1‑131 (MQ=255)                                   ttGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCcaccac                                                                                                                                   <  2:63360/131‑1 (MQ=255)                                   ttGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTAcc                                                                                                                 >  1:148715/1‑149 (MQ=255)                                                acaGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCtt                                                                                                     >  4:170731/1‑148 (MQ=255)                                                acaGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCtt                                                                                                     >  1:86046/1‑148 (MQ=255)                                                acaGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTa                                                                                                    <  8:188162/149‑1 (MQ=255)                                                    gTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTgg                                                                                                >  3:25143/1‑149 (MQ=255)                                                         ttACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGa                                                                                                                                 <  4:313840/111‑1 (MQ=255)                                                         ttACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGa                                                                                                                                 >  3:313840/1‑111 (MQ=255)                                                         ttACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTgg                                                                                            <  4:25143/148‑1 (MQ=255)                                                          tACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGct                                                                                          >  6:331150/1‑149 (MQ=255)                                                            ccTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCACCGCTTACTGGGt                                                                                              >  1:121359/1‑143 (MQ=255)                                                            ccTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCACCGCTTACTGGGt                                                                                              <  2:121359/143‑1 (MQ=255)                                                             cTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGctcct                                                                                       >  3:222863/1‑149 (MQ=255)                                                             cTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGctcct                                                                                       >  6:242513/1‑149 (MQ=255)                                                                cGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCg                                                                                     <  4:176699/148‑1 (MQ=255)                                                                 gTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGga                                                                                   <  3:307353/149‑1 (MQ=255)                                                                  tACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGgag                                                                                  <  1:7127/149‑1 (MQ=255)                                                                    cGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGagag                                                                                <  3:170731/149‑1 (MQ=255)                                                                     gCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAgg                                                                               <  4:222863/149‑1 (MQ=255)                                                                         cGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTa                                                                           <  2:102112/149‑1 (MQ=255)                                                                             aCGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATtgt                                                                       <  3:234258/149‑1 (MQ=255)                                                                                              aaTGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTg                                                       <  6:28865/148‑1 (MQ=255)                                                                                                tGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGc                                                     >  4:250969/1‑148 (MQ=255)                                                                                                 gTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTc                                                              <  3:242553/138‑1 (MQ=255)                                                                                                 gTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTc                                                              >  4:242553/1‑138 (MQ=255)                                                                                                        tgggccagctactttcccagcgagagcctgatgctggcccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGgaga                                                                                 <  1:150298‑M2/70‑1 (MQ=255)                                                                                                        tgggccagctactttcccagcgagagcctgatgctggcccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGgaga                                                                                 >  2:150298‑M2/43‑112 (MQ=255)                                                                                                          ggccagctactttcccagcgagagcctgatgctggcccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAgg                                                                               >  4:127961‑M2/41‑112 (MQ=255)                                                                                                          ggccagctactttcccagcgagagcctgatgctggcccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAgg                                                                               <  3:127961‑M2/72‑1 (MQ=255)                                                                                                          ggccagctactttcccagcgagagcctgatgctggcccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAgg                                                                               <  3:123259‑M2/72‑1 (MQ=255)                                                                                                                    aGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTgg                                 <  2:148715/148‑1 (MQ=255)                                                                                                                      gCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTgg                                                      <  6:235824/125‑1 (MQ=255)                                                                                                                      gCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTgg                                                      >  5:235824/1‑125 (MQ=255)                                                                                                                      gCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCtt                              >  7:31449/1‑149 (MQ=255)                                                                                                                          tcGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGc                            <  2:86046/147‑1 (MQ=255)                                                                                                                          tcGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCAc                          >  6:168849/1‑149 (MQ=255)                                                                                                                                ggAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGa                    >  6:172246/1‑149 (MQ=255)                                                                                                                                 gAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGAc                   <  5:331150/149‑1 (MQ=255)                                                                                                                                        gctggcccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGACATGAGTa            >  5:57567‑M2/11‑149 (MQ=255)                                                                                                                                            gcccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGACATGAGTATTc         >  5:323663‑M2/7‑148 (MQ=255)                                                                                                                                             cccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGACATg                <  6:181474‑M2/135‑1 (MQ=255)                                                                                                                                             cccagTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGACAATACTTCGGCCACGTTGGCTTGCACCGCTGACATg                >  5:181474‑M2/6‑140 (MQ=255)                                                                                                                                                 gTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGACATGAGTATTCGATccc   >  7:151258‑M2/2‑149 (MQ=255)                                                                                                                                                  tCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGACATGAGTATTCGATCCCt  <  5:168849/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GAGCAGCGAGCAGTAGTAGCCTTGCCCCAGATACTTGTAGCTGCGGCACAGGTTGATTACCTGCGTACGCCTCGCAACGTCGTCGCTGTGTTCAATGTAATCCTGGGCCAGCATCAGGCTCTCGCTGGGAAAGTAGCTGGCCCAGTCTTCCTTGCGCTCCACCACGATCAGCAAGCGGTTACCGGCGCTCCGCTTACTGGGTGGCTCCTCGGAGAGGGTTATTGTGGAAACTTCGGTTTTGGCCAATACTTCGGCCACGTTGGCTTGCACCGCTGACATGAGTATTCGATCCCT  >  NC_002947/3360988‑3361281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.