New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4000753 = | 50 (0.990) | 4 (0.080) | 4/242 | NT | 8.1% | coding (435/1365 nt) | dmoA‑II | dimethyl‑sulfide monooxygenase |
? | NC_002947 | 4000806 = | 44 (0.930) | coding (488/1365 nt) | dmoA‑II | dimethyl‑sulfide monooxygenase |
CTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCAT > NC_002947/4000660‑4000950 | ctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGaa > 3:178540/1‑148 (MQ=255) ttCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATa > 4:52742/1‑149 (MQ=255) gCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCt > 6:6437/1‑149 (MQ=255) ccGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGc < 2:286821/149‑1 (MQ=255) ggCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCATCGCT‑ACGACCTGGCCGAGGAATACCTGCAg < 1:30420/149‑1 (MQ=255) ggCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAg < 4:178540/149‑1 (MQ=255) cgcATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAg > 3:174841/1‑147 (MQ=255) cgcATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAg < 4:174841/147‑1 (MQ=255) cgcATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGt > 2:34122/1‑149 (MQ=255) tGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTCACGACCTGGCCGAGGAATACCTGCAGGTGCt < 1:34122/149‑1 (MQ=255) gTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTg > 3:234379/1‑148 (MQ=255) tCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTa > 1:117579/1‑149 (MQ=255) tCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTa < 3:52742/149‑1 (MQ=255) ccACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTa > 5:201248/1‑148 (MQ=255) cACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTAc > 1:274641/1‑148 (MQ=255) aCGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACaa < 2:68179/149‑1 (MQ=255) gACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg > 3:187725/1‑149 (MQ=255) cAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg > 4:93378/1‑138 (MQ=255) cAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg < 3:93378/138‑1 (MQ=255) gCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgac < 5:190676/149‑1 (MQ=255) cTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCCGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCg > 6:326289/1‑149 (MQ=255) tGGAACATCGTAACCGGGTATCTGGACAGCGCTCCGCGCAACCTCGGCCTGGCGCTTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGt > 2:205040/1‑149 (MQ=255) tCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTgg > 5:112675/1‑125 (MQ=255) tCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTgg < 6:112675/125‑1 (MQ=255) tCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAg > 5:116655/1‑149 (MQ=255) tCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACATGGCCGAGGAATACCTGCAGCTGCTGTAGAAGCTGAGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAg > 3:210546/1‑149 (MQ=255) ggACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgacgac > 3:205041/1‑118 (MQ=255) ggACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgacgac < 4:205041/118‑1 (MQ=255) gACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGATAAAAGCTTGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCggg < 6:304804/147‑1 (MQ=255) gACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCgg < 2:117579/146‑1 (MQ=255) aCAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGgcgc < 4:234379/149‑1 (MQ=255) cTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATc > 2:10789/1‑149 (MQ=255) cgcgcAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGaa < 3:165601/149‑1 (MQ=255) cctcggccaggtcgtagcgttggtcgtggccccgttgacgcgccaggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgac < 4:53196‑M2/44‑1 (MQ=255) cctcggccaggtcgtagcgttggtcgtggccccgttgacgcgccaggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgac > 3:53196‑M2/54‑97 (MQ=255) CTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGCCGACGCCGTGCTGCTGGAGCGTGAAAGCgg < 5:118422‑M1/128‑1 (MQ=255) CTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCgg > 6:118422‑M1/1‑128 (MQ=255) GGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGt > 2:146761‑M1/1‑117 (MQ=255) GGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGt < 1:146761‑M1/117‑1 (MQ=255) CCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTac > 6:116655‑M1/1‑149 (MQ=255) ccaggtcgtagcgttggtcgtggccccgttgacgcgccaggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTatat > 7:64261‑M2/48‑132 (MQ=255) ccaggtcgtagcgttggtcgtggccccgttgacgcgccaggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTatat < 8:64261‑M2/85‑1 (MQ=255) gcgcGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATAc > 4:40178/1‑48 (MQ=255) gcgTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGATGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCg > 7:142252/1‑148 (MQ=255) aaCGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCaa < 4:187725/148‑1 (MQ=255) cGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGt < 1:214098/134‑1 (MQ=255) cGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGt > 2:214098/1‑134 (MQ=255) ggCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTTCTGGAGCGTGAAAGCGGGCGCTATATCGAAGCCTCGCGGGTACACCCGATCAACCAtgt < 1:205040/149‑1 (MQ=255) cACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGgc < 8:122379/106‑1 (MQ=255) cACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGgc > 7:122379/1‑106 (MQ=255) gACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGa < 5:6437/149‑1 (MQ=255) aCGCT‑ACGACCTGGTCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACt > 5:29163/1‑149 (MQ=255) aCGCT‑ACGACCTGGCCGAGGAATACCGGCAGGGGTTGTACAAGCTGTGGGACAAACGCTGGCACGCCGACGCCGTGCGGCGGGAGCGTGAAAGCGGGCGCTATATCCAACCCTCGCGGGTACACCCGCTCAACCATGTGGGCGaccgtg < 2:274641/149‑6 (MQ=255) cT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTc > 8:106205/1‑148 (MQ=255) cGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTAGACCCGATCAACCATGTGGGCGAGCACTTCCa < 4:210546/147‑1 (MQ=255) cGACCTGGCCGAGGAATACCCGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAg < 5:326289/148‑1 (MQ=255) ggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCg > 2:40628‑M2/9‑149 (MQ=255) ccgaggAAAACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCgg > 6:281525‑M2/7‑148 (MQ=255) cgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCa > 6:71238‑M2/6‑149 (MQ=255) gaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCAt < 6:201248‑M2/145‑1 (MQ=255) gAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCgg < 1:270222‑M2/98‑1 (MQ=255) gAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCgg > 2:270222‑M2/2‑99 (MQ=255) | CTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACCGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCT‑ACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCAT > NC_002947/4000660‑4000950 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |