New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4184845 =	55 (1.090)	3 (0.060)	3/242	NT	6.3%	coding (623/1659 nt)	PP_3681	putative Helicase
	?	NC_002947	4184885 =	38 (0.800)					coding (663/1659 nt)	PP_3681	putative Helicase

CCGCTGACCAGTACGAGCTCATCAAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAGGGAGAGGTCTTGGCAGTTCATTTC  >  NC_002947/4184737‑4185029                                                                                                                                                     |                                                                                                                                                   ccGCTGACCAGTACGAGCTCATCAAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTa                                                                                                                                                    >  4:310054/1‑149 (MQ=255)  tcagttctgctggcgtcactgctgaggggtcaatttcacggatgatttcattctgaacacgtagcagattggacttcgatctgaaatttgcgtacaggtggaggggtAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTAc                                                                                                                                                   <  4:256868‑M1/42‑1 (MQ=255)    agttctgctggcgtcactgctgaggggtcaatttcacggatgatttcattctgaacacgtagcagattggacttcgatctgaaatttgcgtacaggtggaggggtAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTAccc                                                                                                                                                 >  8:64536‑M1/106‑149 (MQ=255)    agttctgctggcgtcactgctgaggggtcaatttcacggatgatttcattctgaacacgtagcagattggacttcgatctgaaatttgcgtacaggtggaggggtAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTAcc                                                                                                                                                  >  3:256868‑M1/106‑148 (MQ=255)     tGACCAGTACGAGCTCATCAAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTAcccc                                                                                                                                                >  7:59809/1‑149 (MQ=255)           gTACGAGCTCATCAAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCAcc                                                                                                                                          >  7:298524/1‑149 (MQ=255)              cGAGCTCATCAAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGt                                                                                                                                       <  7:82504/149‑1 (MQ=255)                     atcaAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTAc                                                                                                                                                   <  6:183505/130‑1 (MQ=255)                     atcaAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTAc                                                                                                                                                   >  5:183505/1‑130 (MQ=255)                          gctgctCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCa                                                                                                                           <  7:192878/149‑1 (MQ=255)                          gctgctCTTACTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATAGCAAGCAAATGATCATGGCGTGGGAGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCACTACACATCCACCTGTACGCAAAttt                                                                                                                             >  2:259733/1‑147 (MQ=255)                            tgctCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGa                                                                                                                         <  8:59809/149‑1 (MQ=255)                                 ttCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCg                                                                                                                      >  2:55869/1‑147 (MQ=255)                                 ttCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCg                                                                                                                      >  3:49827/1‑147 (MQ=255)                                    cTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTc                                                                                                                >  2:144412/1‑149 (MQ=255)                                         tACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATc                                                                                                           <  2:262379/149‑1 (MQ=255)                                         tACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATc                                                                                                           <  1:144412/149‑1 (MQ=255)                                              gCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTa                                                                                                      <  8:298524/149‑1 (MQ=255)                                              gCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGAATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTa                                                                                                      >  5:62823/1‑149 (MQ=255)                                                   cACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACgtgt                                                                                                 >  3:220382/1‑149 (MQ=255)                                                    aCCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACgtgt                                                                                                 >  1:50844/1‑148 (MQ=255)                                                    aCCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGtt                                                                                                >  7:197285/1‑149 (MQ=255)                                                           cgcgGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAAt                                                                                          >  3:27416/1‑148 (MQ=255)                                                             cgGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTAc                                                                                                     <  4:251685/135‑1 (MQ=255)                                                             cgGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTAc                                                                                                     >  3:251685/1‑135 (MQ=255)                                                                  ggAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAatcat                                                                                  <  4:220382/149‑1 (MQ=255)                                                                  ggAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAatca                                                                                   <  1:55869/148‑1 (MQ=255)                                                                   gagaTCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAatcatc                                                                                 >  2:53354/1‑149 (MQ=255)                                                                     gaTCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGACAGTCCAATCTGCTACGTGTTCAGAATGAAATCATcc                                                                                <  1:53354/149‑1 (MQ=255)                                                                         gcaagcaaATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGa                                                                            >  4:162317/1‑148 (MQ=255)                                                                                aaTGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGAcc                                                                    >  4:251088/1‑149 (MQ=255)                                                                                  tGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGAcccc                                                                  >  4:84980/1‑149 (MQ=255)                                                                                     tCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTc                                                                <  3:162317/148‑1 (MQ=255)                                                                                     tCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTc                                                                <  1:259733/148‑1 (MQ=255)                                                                                                   ggAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCcagc                                                <  8:197285/149‑1 (MQ=255)                                                                                                   ggAGCGATGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCcagc                                                <  4:27416/149‑1 (MQ=255)                                                                                                     aGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGAccc                                                                   >  8:217330/1‑129 (MQ=255)                                                                                                     aGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGAccc                                                                   <  7:217330/129‑1 (MQ=255)                                                                                                        gcTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAAc                                           <  3:84980/149‑1 (MQ=255)                                                                                                         gggtagggcatcgaagtcagtcgcatacgtcttgaagatgccctACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACt                                          >  8:64536‑M2/45‑149 (MQ=255)                                                                                                          ggtagggcatcgaagtcagtcgcatacgtcttgaagatgccctACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACt                                          >  3:256868‑M2/44‑148 (MQ=255)                                                                                                           gtagggcatcgaagtcagtcgcatacgtcttgaagatgccctACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGa                                        <  4:256868‑M2/107‑1 (MQ=255)                                                                                                            gAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGaa                                                                           >  5:299244/1‑114 (MQ=255)                                                                                                            gAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGaa                                                                           <  6:299244/114‑1 (MQ=255)                                                                                                                GCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTa                                                                                                      <  8:24156‑M1/83‑1 (MQ=255)                                                                                                                GCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTa                                                                                                      >  7:24156‑M1/1‑83 (MQ=255)                                                                                                                          gACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAgg                         <  2:50844/149‑1 (MQ=255)                                                                                                                          gACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAgg                         <  3:310054/149‑1 (MQ=255)                                                                                                                                   gactgactTCGATTCACTACCCCTCCACCTCTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCAAACGTCAAATTTACCCCTCAGAAGT‑GAAACCACAAGAACTTATATCGGCTGATGATGCAGAGGTCt                >  8:218182/1‑149 (MQ=255)                                                                                                                                   gactgactTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAGGGAGAGGTCt                >  2:224634/1‑149 (MQ=255)                                                                                                                                        actTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGTCGACGCCAGCAGAACTGATCTCGGGTGATGAGGGAGAGGTCTTg              <  1:224634/147‑1 (MQ=255)                                                                                                                                         ctTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGAGCTCGGGTGATGAGGGAGAGGTCTTGGCAg          >  1:268195/1‑149 (MQ=255)                                                                                                                                         ctTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCAACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAGGGAGAGGTCTTgg             <  8:112859/146‑1 (MQ=255)                                                                                                                                         ctTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCAACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAGGGAGAGGTCTTgg             >  7:112859/1‑146 (MQ=255)                                                                                                                                          ttCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGGTACGTGTTCAGAATGAAATCATCCGTGAAATTGCCCCGTCAGCAGT‑GACGCCCGCAGAACTGATGTCGGGTGATGAGGGAGAGGTCTTGGCAGt         >  6:157227/1‑149 (MQ=255)                                                                                                                                                  cctACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAgg                         >  3:305832‑M2/4‑125 (MQ=255)                                                                                                                                                  cctACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAgg                         <  4:305832‑M2/122‑1 (MQ=255)                                                                                                                                                  cctACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAGGGAGAGGTCTTGGCAGTTCATTTc  >  2:315771‑M2/4‑148 (MQ=255)                                                                                                                                                  cctACCCCTCCACCTGTACGCAAAATTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTg                                                                             >  3:75319‑M2/4‑74 (MQ=255)                                                                                                                                                  cctACCCCTCCACCTGTACGCAAAATTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTg                                                                             <  4:75319‑M2/71‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCGCTGACCAGTACGAGCTCATCAAGCTGCTCTTCCTCGGTACCGGCATCCACCTCACCGCGGTCGGAGATCGCAAGCAAATGATCATGGGGTGGGCGGGAGCGCTGGAGGGCATCTTCAAGACGTATGCGACTGACTTCGATGCCCTACCCCTCCACCTGTACGCAAATTTCAGATCGA‑AGTCCAATCTGCTACGTGTTCAGAATGAAATCATCCGTGAAATTGACCCCTCAGCAGT‑GACGCCAGCAGAACTGATCTCGGGTGATGAGGGAGAGGTCTTGGCAGTTCATTTC  >  NC_002947/4184737‑4185029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.