New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4786030 =	46 (0.910)	4 (0.080)	3/242	NT	9.4%	coding (1284/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4786078 =	34 (0.720)					coding (1236/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

GTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGCTCCTGATGC  >  NC_002947/4785935‑4786225                                                                                                                                                |                                                                                                                                                    gTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCCACCTGCATAcc                                                                                                                                                >  4:213056/1‑149 (MQ=255)    aCCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCt                                                                                                                                             >  2:212074/1‑149 (MQ=255)        ggCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAgg                                                                                                                                         <  2:227955/149‑1 (MQ=255)         gcgcTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAggg                                                                                                                                        >  7:278444/1‑149 (MQ=255)            cTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCt                                                                                                                                     >  6:293810/1‑149 (MQ=255)                    tGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCTCCGCTGAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCgctgc                                                                                                                             <  1:212074/149‑1 (MQ=255)                               aaCAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCgg                                                                                                                   <  8:197232/148‑1 (MQ=255)                                    gTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCt                                                                                                              >  6:140521/1‑148 (MQ=255)                                       ggTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCa                                                                                                           <  3:262144/148‑1 (MQ=255)                                                ggTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGt                                                                                                 >  2:222788/1‑149 (MQ=255)                                                  tGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAAGGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTc                                                                                               <  3:213056/149‑1 (MQ=255)                                                  tGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGccgccg                                                                                                                    <  7:21623/128‑1 (MQ=255)                                                  tGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGccgccg                                                                                                                    >  8:21623/1‑128 (MQ=255)                                                     aGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTgg                                                                                            <  5:293810/149‑1 (MQ=255)                                                     aGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTg                                                                                             <  5:140521/148‑1 (MQ=255)                                                          gCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCCGCTTCACCCGCGACGTTCTGGTTGAg                                                                                       >  7:174346/1‑149 (MQ=255)                                                           ccTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGc                                                                                      <  5:250272/149‑1 (MQ=255)                                                               gATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGc                                                                                                                                                     >  7:218031/1‑82 (MQ=255)                                                               gATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGc                                                                                                                                                     <  8:218031/82‑1 (MQ=255)                                                               gATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTg                                                                                   <  3:133067/148‑1 (MQ=255)                                                                  aCCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACt                                                                               >  3:91131/1‑149 (MQ=255)                                                                             cATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCggg                                                                    <  8:278444/149‑1 (MQ=255)                                                                              aTCAGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGt                                                                   >  6:168123/1‑149 (MQ=255)                                                                                  gTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATg                                                               >  5:59396/1‑149 (MQ=255)                                                                                   tGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATgg                                                              <  2:201049/149‑1 (MQ=255)                                                                                      aGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTg                                                           <  4:91131/149‑1 (MQ=255)                                                                                        tCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAg                                                         >  4:237731/1‑149 (MQ=255)                                                                                              gCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTgcg                                                   <  1:222788/149‑1 (MQ=255)                                                                                                caggtcgaggagtacccgttgagcggcgccgatgcgcgtttcgacctgCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTgcgc                                                  <  7:232583‑M2/100‑1 (MQ=255)                                                                                                caggtcgaggagtacccgttgagcggcgccgatgcgcgtttcgacctgCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTgcgc                                                  >  8:232583‑M2/49‑148 (MQ=255)                                                                                                caggtcgaggagtacccgttgagcggcgccgatgcgcgtttcgacctgCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGct                                                 >  4:50086‑M2/49‑149 (MQ=255)                                                                                                 AGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGctc                                                <  4:258955‑M1/149‑1 (MQ=255)                                                                                                   GTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTg                                              <  6:187929‑M1/149‑1 (MQ=255)                                                                                                   GTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTg                                              <  2:69101‑M1/149‑1 (MQ=255)                                                                                                     CGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTggg                                            >  6:59396‑M1/1‑149 (MQ=255)                                                                                                       AAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTgcg                                                   >  8:264780‑M1/1‑140 (MQ=255)                                                                                                       AAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTgcg                                                   <  7:264780‑M1/140‑1 (MQ=255)                                                                                                       AAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGc                                          <  2:165790‑M1/149‑1 (MQ=255)                                                                                                         gagtacccgttgagcggcgccgatgcgcgtttcgacctgCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCa                                        <  3:50086‑M2/110‑1 (MQ=255)                                                                                                           gcgcATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAgc                                      <  2:176220/149‑1 (MQ=255)                                                                                                               aTCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCAt                                  <  5:168123/149‑1 (MQ=255)                                                                                                                tCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATc                                 <  1:69101/149‑1 (MQ=255)                                                                                                                  ggCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGa                               >  3:70461/1‑149 (MQ=255)                                                                                                                   gcgcCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGAc                              >  7:86114/1‑149 (MQ=255)                                                                                                                         cTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATg                                                               >  6:142637/1‑110 (MQ=255)                                                                                                                         cTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATg                                                               <  5:142637/110‑1 (MQ=255)                                                                                                                            aaCGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCt                      >  4:97520/1‑148 (MQ=255)                                                                                                                                      cctcGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGc           >  3:94089/1‑149 (MQ=255)                                                                                                                                      cctcGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGc           >  4:203748/1‑149 (MQ=255)                                                                                                                                       ctcGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGc           >  8:176219/1‑148 (MQ=255)                                                                                                                                       ctcGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGc           <  7:176219/148‑1 (MQ=255)                                                                                                                                           acctgCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGCTCCTg      <  6:159652‑M2/144‑1 (MQ=255)                                                                                                                                              tccAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTACTAGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGCTTGCGCTCTGGGGACAGCGCATCGACCAGATGCTCAAACGCCAGCTCCTGATg   >  6:78007/3‑149 (MQ=255)                                                                                                                                               gCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGCTCCTGATGc  >  6:90943‑M2/2‑149 (MQ=255)                                                                                                                                                cAGACCGCTGAGGGTCTTGCGCAGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGCTCCTGATGc  >  7:72793/1‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                    GTCACCAGGCGCTCGACGGTGCTGGCCTTGAACAGGTCGGTTGCATAGGTGAAGTACGCCTGGATACCGTCGGCGCCATCGGTGAAGTCGAAGGCCAGGTCGAAACGCGCATCGGCGCCGCTCAACGGGTACTCCTCGACCTGCAGACCGCTGAGGGTCTTGCGCTGCTCGCCGCCGGCAGCTTCACCCGCGACGTTCTGGTTGAGCTTGAACTGGAACAGCGGGTTATGGCTGAGGTTGCGCTCTGGGGCCAGCGCATCGACCAGTTGCTCAAACGGCAGCTCCTGATGC  >  NC_002947/4785935‑4786225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.