New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5388632 =	56 (1.110)	3 (0.060)	3/250	NT	5.8%	coding (2142/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	5388688 =	44 (0.900)					coding (2198/2811 nt)	dld2	D‑lactate dehydrogenase

CCGCAACCGCTTCGCCCGCTGGCCTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCC  >  NC_002947/5388540‑5388831                                                                                                                                                     |                                                                                                                                                 ccGCAACCGCTTCGCCCGCTGGCCTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGATCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCct                                                                                                                                                  >  1:263046/1‑149 (MQ=255) ccGCAACCGCTTCGCCCGCTGGCCTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCct                                                                                                                                                  >  5:253190/1‑149 (MQ=255)    cAACCGCTTCGCCCGCTGGCCTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGATCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCctgct                                                                                                                                               <  2:263046/149‑1 (MQ=255)     gggtagcccttggaggcgaacggttggccgcagcacaggctgtcggcgttgtcggggaacaccacctggtaaccggccttttccagcaGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCctgctg                                                                                                                                              >  1:290567‑M1/89‑149 (MQ=255)     aaCCGCTTCGCCCGCTGGCCTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCctgctg                                                                                                                                              <  3:180227/149‑1 (MQ=255)            tCGCCCGCTGGCCTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAgg                                                                                                                                       >  1:98729/1‑149 (MQ=255)                ccGCTGGCCTTCGGCGCCACCACCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCgg                                                                                                                                   <  4:206760/149‑1 (MQ=255)                        cTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGATGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAgg                                                                                                                           >  3:288978/1‑149 (MQ=255)                         ttCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAggt                                                                                                                          >  3:192685/1‑149 (MQ=255)                          tCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAggt‑g                                                                                                                        >  6:36891/1‑149 (MQ=255)                           cGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAggt‑g                                                                                                                        <  3:95494/148‑1 (MQ=255)                             gcgcCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAggt‑gg                                                                                                                       >  8:211799/1‑147 (MQ=255)                             gcgcCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAggt‑gg                                                                                                                       <  7:211799/147‑1 (MQ=255)                             gcgcCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGgt‑ggtg                                                                                                                     <  2:50693/149‑1 (MQ=255)                                 caccaGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTcc                                                                                                                 >  7:92843/1‑149 (MQ=255)                                 caccaGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTcc                                                                                                                 <  4:192685/149‑1 (MQ=255)                                  accaGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTccc                                                                                                                >  5:221517/1‑149 (MQ=255)                                   ccaGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTcccc                                                                                                               <  2:305572/149‑1 (MQ=255)                                    caGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGATGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GTGGTTaccc                                                                                                               >  4:263736/1‑148 (MQ=255)                                     aGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGGTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGa                                                                                                             <  8:131212/149‑1 (MQ=255)                                               cccgcccCCGCTTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGCGCCCGGCCTATGCCGACCTCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGa                                                                                                    >  1:232350/1‑148 (MQ=255)                                                             gtgtACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCgg                                                                                     >  4:279749/1‑149 (MQ=255)                                                             gtgtACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCg                                                                                      <  2:313844/148‑1 (MQ=255)                                                              tgtACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGc                                                                                    >  3:78176/1‑149 (MQ=255)                                                               gtACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGc                                                                                    >  3:33372/1‑148 (MQ=255)                                                                      gccgccTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGtt                                                                            <  6:253190/149‑1 (MQ=255)                                                                      gccgccTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGtt                                                                            <  8:92843/149‑1 (MQ=255)                                                                       ccgccTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTc                                                                           <  5:36891/149‑1 (MQ=255)                                                                        cgccTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCg                                                                          >  4:14170/1‑149 (MQ=255)                                                                           cagCGTTTCCCGGCTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAATAGGCCGGTAACCAGGT‑GCTGTACCCCGACAACTCCGACAGCCTGTCCTCCGGCCAACCGTACGACt                                                                       >  6:54716/3‑149 (MQ=255)                                                                           cTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCt                                                                       <  4:251083/149‑1 (MQ=255)                                                                            tGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTc                                                                      >  8:192637/1‑149 (MQ=255)                                                                              cGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTcc                                                                     <  3:14170/148‑1 (MQ=255)                                                                               gTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTcc                                                                     >  4:20576/1‑147 (MQ=255)                                                                                    ccGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAgg                                                                 >  6:324698/1‑146 (MQ=255)                                                                                    ccGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAgg                                                                 <  5:324698/146‑1 (MQ=255)                                                                                        cagcagggcgcgggttttgtccagcagcgagctttgctcgcggtcggcataggccgggcccTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTAccc                                                          >  1:290567‑M2/62‑149 (MQ=255)                                                                                           aTGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAgg                                                                 >  4:250058/1‑139 (MQ=255)                                                                                           aTGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAgg                                                                 <  3:250058/139‑1 (MQ=255)                                                                                              ggcgcgggttttgtccagcagcgagctttgctcgcggtcggcataggccgggcccTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAg                                                      >  4:46136‑M2/56‑147 (MQ=255)                                                                                                     gttttgtccagcagcgagctttgctcgcggtcggcataggccgggcccTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGaa                                             <  2:290567‑M2/101‑1 (MQ=255)                                                                                                     ccTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGaa                                             <  4:33372/149‑1 (MQ=255)                                                                                                       tATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAaca                                           >  6:204281/1‑149 (MQ=255)                                                                                                         tGCCGACCGCTAGCAAAGCTCGCTGCTGTACAAATCCCGCGCCCTGCTGGAAATGGCCGGTTACCAGGT‑GGTGTTCCCCTACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAaca                                           <  2:232350/147‑1 (MQ=255)                                                                                                         tGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAacac                                          <  2:98729/148‑1 (MQ=255)                                                                                                            cGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAAc                                      >  8:32763/1‑149 (MQ=255)                                                                                                                 gcgAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAg                                 <  4:288978/149‑1 (MQ=255)                                                                                                                       aaaGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTg                           <  6:78630/149‑1 (MQ=255)                                                                                                                                     gACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCctgc              <  3:263736/148‑1 (MQ=255)                                                                                                                                          aaCCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACg        >  2:107060/1‑149 (MQ=255)                                                                                                                                           aCCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGtgc                                                                                          <  1:9704/66‑1 (MQ=255)                                                                                                                                           aCCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGtgc                                                                                          >  2:9704/1‑66 (MQ=255)                                                                                                                                              cgcgCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCaa                                                                   >  7:164350/1‑86 (MQ=255)                                                                                                                                              cgcgCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCaa                                                                   <  8:164350/86‑1 (MQ=255)                                                                                                                                               gcgcCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGc   <  3:20576/149‑1 (MQ=255)                                                                                                                                                 gcccTGCTGGAAAAGGCCGGTTACCAGGTGGGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGcc  >  1:34460‑M2/5‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CCGCAACCGCTTCGCCCGCTGGCCTTCGGCGCCACCAGCAACGACGCCCGCCCCCGCGTGGTGTACCTGGCCGCCTGCGTTTCCCGGGTAATGGGCCCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGT‑GGTGTTCCCCGACAACGCCGACAGCCTGTGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCC  >  NC_002947/5388540‑5388831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.