New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5876984 =	29 (0.580)	5 (0.120)	5/210	NT	18.3%	intergenic (+6/+99)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein
	?	NC_002947	5877066 =	21 (0.510)					intergenic (+88/+17)	rpiA/PP_5151	ribose‑5‑phosphate isomerase A/hypothetical protein

CCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTGGAAACCCTTGCGCAA  >  NC_002947/5876919‑5877214                                                                                                                                                     |                                                                                                                                                      ccggcGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAACGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACa                                                                                                                                                      <  3:203732/149‑1 (MQ=255)   ggcggATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAgg                                                                                                                                                    <  7:216667/149‑1 (MQ=255)       gATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCt                                                                                                                                                <  7:123726/149‑1 (MQ=255)                ctgctgGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCAGGAACCGTGGCGATCCCTGTAGGAG‑CGGGGTTACCCGCGCACAGGCCCTGACAGGCGa                                                                                                                                       >  8:243068/1‑149 (MQ=255)                     ggccACCGCTGAAGGCGTGAATCGCCTGAAGGCCGAGTAAACCCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGCACCCGTGGCGATCCCTGTAGCAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                                                  <  3:7681/146‑1 (MQ=255)                      ggCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGAtcagt                                                                                                                                  <  7:251926/148‑1 (MQ=255)                         aCCGCTGAAGGCGTGAAGCGCCTGAATGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATcagtcagt                                                                                                                              <  5:310648/149‑1 (MQ=255)                                aaGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGgctgc                                                                                                                       <  5:288304/149‑1 (MQ=255)                                aaGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAAACCCCAACAAAAAAATAAACCACCCCCCAGGAACCCTTGCGATACCAGTAGGAGACGGGTTTAACC‑CCAACACGCCCAGACACGCGAACAGTAAGTAGgcggg                                                                                                                       >  4:146851/1‑146 (MQ=255)                                     gTGAAGAGCCTGAAGTCCGAGTAAACCCCTTCGCGGGTAAACCCGCTCCTACACGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGTAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGaa                                                                                                                  <  8:38727/149‑1 (MQ=255)                                                 aaGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACa                                                                                                       <  3:106434/148‑1 (MQ=255)                                                 aaGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAg                                                                                                      <  7:56003/149‑1 (MQ=255)                                                      cGAGTAAAACCCTTCGCGGGTAAACCCCCTCCAACAATGTAACCCACCCGCCGGGCAACGTGGCGATCCCGGTAAGAG‑CCGGGTTAACCGCGCACACGCCCAGAAACGCGAAAATTCAGTCGGCTGCTTGAACACATAGAAAAGGttag                                                                                                 >  6:141332/1‑147 (MQ=255)                                                      cGAGTAAAACCCTTCGCGGGTAAACCCCCACCAAAAAAGTACCCCCCCCGCCTGGAACCCTGGCGAACCCACGAGGAC‑CCGGGTTACCCCCGCACACCCCCAGCCAGGCGATCAGTCACTCGGCGGCTTGAAAACAAATAACACGttag                                                                                                 >  8:147698/1‑147 (MQ=255)                                                        aGTAAAACCCTTCGCGGGTAAAACCCCTCCAACAAAGTACCCCACCGGCCAGGAACCCAGGCGATCCCAGTAGGCG‑CGGGTTTAACCGCGAACAAGCCCGGACAGGCGATCAGTCACTCGGCGGCTTGAACACAAATAACAGGTTAGGc                                                                                               >  2:239682/1‑149 (MQ=255)                                                                ccTTCGCGGGTAAACCCCCGACAAAAAAGTACCCCCCCCGCCTGGAACCGTGGCGCTACCGGGAGGAG‑CGGGGTTAACCCCGAACAGGCCCTGACAGGCGCTCAGTCAGTAGGCTGGTTGAACACATAAAACACGGTAGGCTCACAGAc                                                                                       >  2:14231/1‑149 (MQ=255)                                                                    CGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCa                                                                                     >  7:246514‑M1/1‑147 (MQ=255)                                                                    CGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAg                                                                                    >  1:239682‑M1/1‑148 (MQ=255)                                                                         GTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAAt                                                                              >  7:147698‑M1/1‑149 (MQ=255)                                                                          TAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg                                                                             >  7:43894‑M1/1‑149 (MQ=255)                                                                               CCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc                                                                        >  5:141332‑M1/1‑149 (MQ=255)                                                                                ccgctcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTccc                                                                        >  4:103728‑M2/70‑149 (MQ=255)                                                                                    tcctacagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCt                                                                    >  7:34395‑M2/66‑149 (MQ=255)                                                                                     CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCtt                                                                   <  2:43384‑M1/148‑1 (MQ=255)                                                                                     CTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCtt                                                                   <  4:204802‑M1/148‑1 (MQ=255)                                                                                       ACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGATGCTTGAACACATAGAACAGGTTCGGCTCACTTACAAgg                                                                                   <  2:202708‑M1/130‑1 (MQ=255)                                                                                         cagggatcgccacggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTca                                                                 <  3:103728‑M2/87‑1 (MQ=255)                                                                                            gTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGc                                                                                               <  2:41058/113‑1 (MQ=255)                                                                                            gTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGc                                                                                               >  1:41058/1‑113 (MQ=255)                                                                                                      ggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg                                                                             <  5:41661‑M2/75‑1 (MQ=255)                                                                                                      ggttccaggccggtggggtaccttgtaggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATg                                                                             >  6:41661‑M2/48‑122 (MQ=255)                                                                                                           ggAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGcc                                            >  6:176933/1‑149 (MQ=255)                                                                                                            gAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCt                                           >  4:237278/1‑149 (MQ=255)                                                                                                              aCCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAAAATGCCCTTACAGGCGATCAGTCAGTCGGCTGCTTTAACACATAGAACAGGTTCGGCTCACTTACCATGTAAATTGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGc                                         <  3:146851/149‑1 (MQ=255)                                                                                                                  tGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTg                                          <  2:153377/144‑1 (MQ=255)                                                                                                                  tGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTg                                          >  1:153377/1‑144 (MQ=255)                                                                                                                          ccTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGcc                            >  6:111491/1‑149 (MQ=255)                                                                                                                               taggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGc                                             >  1:140069‑M2/23‑129 (MQ=255)                                                                                                                               taggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGc                                             <  2:140069‑M2/107‑1 (MQ=255)                                                                                                                               taggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑Tc                               >  4:182104‑M2/23‑142 (MQ=255)                                                                                                                               taggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑Tc                               <  3:182104‑M2/120‑1 (MQ=255)                                                                                                                                aggagcgggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCaa                       >  4:133518‑M2/22‑149 (MQ=255)                                                                                                                                      gggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCAcc                                   >  1:246059‑M2/16‑132 (MQ=255)                                                                                                                                      gggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCAcc                                   <  2:246059‑M2/117‑1 (MQ=255)                                                                                                                                       ggtttacccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTg                 >  3:26682‑M2/15‑148 (MQ=255)                                                                                                                                            acccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTGGAAAc            <  3:237278‑M2/139‑1 (MQ=255)                                                                                                                                              ccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCg                              >  4:26481‑M2/8‑128 (MQ=255)                                                                                                                                              ccgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCg                              <  3:26481‑M2/121‑1 (MQ=255)                                                                                                                                               cgcgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTGGAAACCCtt        >  6:232311‑M2/7‑149 (MQ=255)                                                                                                                                                 cgaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTGGAAACCCTTgc      <  7:94103‑M2/145‑1 (MQ=255)                                                                                                                                                  gaaCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCGCTCGCCTGCAACCCCTGGAAACCCTTgc      <  1:14231‑M2/146‑1 (MQ=255)                                                                                                                                                    aCAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAATTGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTGGAAACCCTTgcgc    >  5:3276‑M2/2‑148 (MQ=255)                                                                                                                                                     cAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTGGAAACCCTTGCGCaa  <  3:204802/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CCGGCGGATCTGCTGCTGCTGGGCACCGCTGAAGGCGTGAAGAGCCTGAAGGCCGAGTAAAACCCTTCGCGGGTAAACCCGCTCCTACAAGGTACCCCACCGGCCTGGAACCGTGGCGATCCCTGTAGGAG‑CGGGTTTACCCGCGAACAGGCCCTGACAGGCGATCAGTCAGTCGGCTGCTTGAACACATAGAACAGGTTCGGCTCACTGACCAGGTAAATGGTCCCCGCTTCATCCATCGCAATCCCCTCCGCCTGCGGCACCG‑TCGCCTGCAACCCCTGGAAACCCTTGCGCAA  >  NC_002947/5876919‑5877214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.