New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	90510 =	53 (0.980)	4 (0.080)	4/254	NT	7.0%	coding (555/618 nt)	PP_0080	hypothetical protein
	?	NC_002947	90563 =	56 (1.080)					coding (502/618 nt)	PP_0080	hypothetical protein

GATGGGTTGCAGCGCAGTGCCTTGCACTGGACGCTGATCAATGCACCGCAGGAACTGGCCGGGTTAGGCATGGAGCATTTTCGCAGTACCGAAGGCACGCTGGAGCCTGGGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/90659‑90510 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgTGCCTTCGGTACTGCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTGCGGTGCATTGATCAGCGTCCAGTGCAAGGCACTGCGCTGCAACCCATCAACCACCTGGGCCACGCATTCCCGCTCCACCTCGCTGTACTTGCCC  >  NC_002947/90563‑90705                                                                                                                                                                                                                                                                                                       GATGGGTTGCAGCGCAGTGCCTTGCACTGGACGCTGATCAATGCACCGCAGGAACTGGCCGGGTTAGGCATGGAGCATTTTCGCAGTACCGAAGGCACGCTGGAGCCTGGGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCAGC                                                                                                                                                  >  7:248851/1‑149                     CTTGCACTGGACGCTGATCAATGCACCGCAGGAACTGGCCGGGTTAGGCATGGAGCATTTTCGCAGTACCGAAGGCACGCTGGAGCCTGGGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCgct                                                                                                                                                  >  3:266615/1‑126                     CTTGCACTGGACGCTGATCAATGCACCGCAGGAACTGGCCGGGTTAGGCATGGAGCATTTTCGCAGTACCGAAGGCACGCTGGAGCCTGGGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCgct                                                                                                                                                  <  4:266615/129‑4                                                                                              GGCACGCTGGAGCCTGGGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCAGCGTGCCTTCGGTACTGCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTGCGGTGCATTGATCAGC                                                                                >  3:268554/1‑122                                                                                              GGCACGCTGGAGCCTGGGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCAGCGTGCCTTCGGTACTGCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTGCGGTGCATTGATCAGC                                                                                <  4:268554/122‑1                                                                                                              GGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCAGCGTGCCTTCGGTACTTCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTG                                                                                                >  1:259236/1‑90                                                                                                              GGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCAGCGTGCCTTCGGTACTGCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTG                                                                                                <  2:259236/90‑1                                                                                                                                                  CAGCGTGCCTTCGGTACTGCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTGCGGTGCATTGATCAGCGTCCAGTGCAAGGCACTGCGCTGCAACCCATCAACCACCTGGGCCACGCATTCCCGCTCCACCTCGCTGTACTTGCCC  <  1:261487/148‑1                                                                                                                                                  CAGAGTGCCTTCGGTACTGCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTGCGGTGCATTGATCAGCGTCCAGTGCAAGGCACTGCGCTGCAACCCATCAACCACCTGGGCCACGCATTCCCGCTCCACCTCGCTGTACTTGCC   <  7:40586/147‑1                                                                                                                                                                                                                                                                                                       GATGGGTTGCAGCGCAGTGCCTTGCACTGGACGCTGATCAATGCACCGCAGGAACTGGCCGGGTTAGGCATGGAGCATTTTCGCAGTACCGAAGGCACGCTGGAGCCTGGGCTGGCTGAGCCGTTGCGGCGCTTGTCCAGGATCGCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/90659‑90510 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgTGCCTTCGGTACTGCGAAAATGCTCCATGCCTAACCCGGCCAGTTCCTGCGGTGCATTGATCAGCGTCCAGTGCAAGGCACTGCGCTGCAACCCATCAACCACCTGGGCCACGCATTCCCGCTCCACCTCGCTGTACTTGCCC  >  NC_002947/90563‑90705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.