New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 458840	55 (1.020)	4 (0.080)	4/242	NT	7.7%	intergenic (‑61/+103)	pqqC/pqqB	pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B
	?	NC_002947	= 458903	46 (0.930)					intergenic (‑124/+40)	pqqC/pqqB	pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B

ATCGCCACGTGGTACGGGTGATGGATGTGGTAATAGGCGCCCTTGGCGCGCAGGGCCTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/458682‑458840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAAGGGAGAGAGATGTGCCAGGCCAGATAATCGTTCTACAGGAGCCAGCCGAATGAGCGACGCACTGCCAAT  <  NC_002947/458903‑458760                                                                                                                                                                                                                                                                                                                 ATCGCCACGTGGTACGGGTGATGGATGTGGTAATAGGCGCCCTTGGCGCGCAGGGCCTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTT                                                                                                                                                            >  1:219009/1‑149    GCCACGTGGTACGGGTGATGGATGTGGTAATAGGCGCCCTTGGCGCGCAGGGCCTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGT                                                                                                                                                          <  2:116265/148‑1     CCACGTGGTACGGGTGATGGATGTGGTAATAGGCGCCCTTGGCGCGCAGGGCCTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGT                                                                                                                                                          >  3:188753/1‑147     CCACGTGGTACGGGTGATGGATGTGGTAATAGGCGCCCTTGGCGCGCAGGGCCTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGT                                                                                                                                                          <  4:188753/147‑1                                     GCGCCCTTGGCGCGCAGGGCCTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGG                                                                                                                        >  5:309698/1‑149                                                         CTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCC                                                                                                    >  5:306208/1‑149                                                                            GACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCC                                                                                 <  6:306208/149‑1                                                                                             GCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAAGGGAGA                                                                 <  6:309698/148‑1                                                                                                                                                     TGTGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAAGGGAGAGAGATGTGCCAGGCCAGATAATCGTTCTACAGGAGCCAGCCGAATGAGCGACGCACT        >  3:279135/1‑149                                                                                                                                                       TGGGAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAAGGGAGAGAGATGTGCCAGGCCAGATAATCGTTCTACAGGAGCCAGCCGAATGAGCGACGCACTG       <  3:21170/148‑1                                                                                                                                                          GAGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAAGGGAGAGAGATGTGCCAGGCCAGATAATCGTTCTACAGGAGCCAGCCGAATGAGCGACGCACTGCCAA   >  2:79581/1‑149                                                                                                                                                           AGCGGGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAAGGGAGAGAGATGTGCCAGGCCAGATAATCGTTCTACAGGAGCCAGCCGAATGAGCGACGCACTGCCAAT  >  6:250461/1‑149                                                                                                                                                                                                                                                                                                                 ATCGCCACGTGGTACGGGTGATGGATGTGGTAATAGGCGCCCTTGGCGCGCAGGGCCTGCTCGAACTCGGCAGGGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/458682‑458840 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggGCATGCCCGCGAAAAAGCCAACACGGTCTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGTCCGCTCCCACAAGGGAGAGAGATGTGCCAGGCCAGATAATCGTTCTACAGGAGCCAGCCGAATGAGCGACGCACTGCCAAT  <  NC_002947/458903‑458760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.