New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 458840 | 55 (1.020) | 4 (0.080) | 4/242 | NT | 7.7% | intergenic (‑61/+103) | pqqC/pqqB | pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B |
? | NC_002947 | = 458903 | 46 (0.930) | intergenic (‑124/+40) | pqqC/pqqB | pyrroloquinoline‑quinone synthase/coenzyme PQQ synthesis protein B |
GGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTG > NC_002947/458755‑459050 | gggACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGc > 4:279135/1‑149 (MQ=255) aTTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCccgct > 6:250461‑M2/1‑144 (MQ=255) ttGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCccgctc > 2:79581‑M2/1‑143 (MQ=255) cAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCccgctccca < 3:21170‑M2/148‑10 (MQ=255) aGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCccgctcccaca > 3:279135‑M2/1‑138 (MQ=255) cGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTg > 8:180559/1‑149 (MQ=255) aTTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCTGCTCCCACAGGGTCTGGTGTc > 7:153650/1‑149 (MQ=255) cTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTg > 1:330149/1‑149 (MQ=255) gAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTc > 5:268380/1‑131 (MQ=255) gAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTc < 6:268380/131‑1 (MQ=255) gAACGATTATCTGGCCTGGCACATCTCCCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTAtt > 2:213033/1‑148 (MQ=255) aaCGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGAc > 4:303900/1‑141 (MQ=255) aaCGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGAc < 3:303900/141‑1 (MQ=255) aCGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTa > 1:159868/1‑148 (MQ=255) aCGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTAc < 1:196967/149‑1 (MQ=255) cGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTAc > 5:339511/1‑148 (MQ=255) tggcctggcACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATg > 6:27521/1‑149 (MQ=255) gcctggcACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATg < 3:302937/147‑1 (MQ=255) ctggcACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCTGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCa < 8:153650/149‑1 (MQ=255) tggcACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCAt > 1:54559/1‑149 (MQ=255) gcACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCAt < 2:330149/147‑1 (MQ=255) gcACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCAt < 7:180559/147‑1 (MQ=255) ctctctcCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCg > 8:213689/1‑148 (MQ=255) tctctcCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGa < 1:55505/133‑1 (MQ=255) tctctcCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGa > 2:55505/1‑133 (MQ=255) tctcCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCccgctcccacaagggagagagatgtgccaggccagataatcgttctacaggagccagccgaatgagc < 6:309698‑M2/148‑68 (MQ=255) tcCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAg < 7:139465/146‑1 (MQ=255) tcCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGc > 5:49292/1‑148 (MQ=255) tcCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGc > 5:30413/1‑148 (MQ=255) ccTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAgtg < 6:23403/91‑3 (MQ=255) ccTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAggg > 5:23403/1‑91 (MQ=255) ttGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTAGTTACAACTCGCTGCTCATGCCAACGAAGGCAACtt > 3:232643/1‑149 (MQ=255) gggAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGAc > 1:310339/1‑149 (MQ=255) gggAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGAc > 5:233938/1‑149 (MQ=255) gggAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGAAAATTCGAc > 6:234883/1‑149 (MQ=255) ggACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCccgctcccacaagggagagagatgtgccaggccagataatcgttctacaggagccagccgaatgagcgacgcactgccaatgtc < 6:306208‑M2/149‑85 (MQ=255) cccGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTAGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATAGAAGGCAACTTCGACGCCCCGGCGCAg > 3:67882/1‑148 (MQ=255) aaCACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCg < 4:21170/149‑1 (MQ=255) ggCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCccgctcccacaagggagagagatgtgccaggccagataatcgttctacaggagccagccgaatgagcgacgcactgccaatgtcccctgccgagttcgagcag > 5:306208‑M2/1‑46 (MQ=255) gCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCg < 8:201051/121‑1 (MQ=255) gCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCt > 6:167222/1‑149 (MQ=255) gCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCgggg < 5:27521/149‑1 (MQ=255) cGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCgggg > 7:276791/1‑147 (MQ=255) gACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATc > 6:302032/1‑148 (MQ=255) aCCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCAACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATc > 5:68911/1‑147 (MQ=255) ccGTGTTGGCTTTTTCGCGGGCATGCccgctcccacaagggagagagatgtgccaggccagataatcgttctacaggagccagccgaatgagcgacgcactgccaatgtcccctgccgagttcgagcaggccctgcgcgccaagggcgc > 5:309698‑M2/1‑26 (MQ=255) cGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCgaga < 6:30413/149‑1 (MQ=255) ttGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATc < 4:67882/148‑1 (MQ=255) gCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCAt < 6:203164/137‑1 (MQ=255) gCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCAt > 5:203164/1‑137 (MQ=255) gCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCga > 3:161286/1‑140 (MQ=255) gCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCga < 4:161286/140‑1 (MQ=255) gCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGt < 7:213689/149‑1 (MQ=255) cTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGtt > 1:208253/1‑149 (MQ=255) tttttCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTg > 8:155019/1‑149 (MQ=255) gcgGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGtgttg > 5:229742/1‑149 (MQ=255) gCATGCCCGCTCCAACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGa < 6:68911/149‑1 (MQ=255) gCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGAtgt < 7:20156/148‑1 (MQ=255) gCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGAtgt > 8:20156/1‑148 (MQ=255) gCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACAGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGAtgtg > 1:55625/1‑149 (MQ=255) cccGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGAtgtg > 4:314392/1‑148 (MQ=255) | GGGACATTGGCAGTGCGTCGCTCATTCGGCTGGCTCCTGTAGAACGATTATCTGGCCTGGCACATCTCTCTCCCTTGTGGGAGCGGACGTGCCCGCGAACACCGGCGAAGCCGGTGCCATAGACCGTGTTGGCTTTTTCGCGGGCATGCCCGCTCCCACAGGGTCTGGTGTCGCCTCACAGACTGTATTTACAACTCGATGCTCATGCCATCGAAGGCAACTTCGACGCCCCGGCGCAGGACTTCGGCGCGCTCGGGGGAGTTTTCATCGAGAATCGGGTTGGTGTTGTTGATGTG > NC_002947/458755‑459050 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |