New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	887383 =	46 (0.850)	5 (0.100)	5/254	NT	9.6%	coding (417/1608 nt)	PP_0768	TPR domain‑containing response regulator
	?	NC_002947	887429 =	50 (0.970)					coding (463/1608 nt)	PP_0768	TPR domain‑containing response regulator

ACAGCTCGGCGCAGGCCGCCAGTACTTCGGCCGGACGGTTGCGGTCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/887435‑887383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAATTCCTCAAGGCCATCCTGGC  >  NC_002947/887429‑887544                                                                                                                                                                           ACAGCTCGGCGCAGGCCGCCAGTACTTCGGCCGGACGGTTGCGGTCCAGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAA                      >  1:308913/1‑149  CAGCTCGGCGCAGGCCGCCAGTACTTCGGCCGGACGGTTGCGGTCCAGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAA                         >  3:294395/1‑145  CAGCTCGGCGCAGGCCGCCAGTACTTCGGCCGGACGGTTGCGGTCCAGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAA                         <  4:294395/145‑1      TCGGCGCAGGCCGCCAGTACTTCGGCCGGACGGTTGCGGTCCAGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAATTCCT                 >  2:139641/1‑149                     AGTACTTCGGCCGGACGGTTGCGGTCCAGCGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAATTCCTCAAGGCCATCCTGGC  <  1:139641/149‑1                                                  CGCCGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAAC                                           >  6:175201/1‑79                                                                                                                                                                           ACAGCTCGGCGCAGGCCGCCAGTACTTCGGCCGGACGGTTGCGGTCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/887435‑887383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccGAGCTGTGCAAGAAGGATCCGCGCCTGGCGCCCTTGTGCTTGCGCTACCGGGCCGATGCCCTGCGCAACCTCAACCGTTTCGAGGAACTGGAAAAATTCCTCAAGGCCATCCTGGC  >  NC_002947/887429‑887544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.